The 2.0 version of rSNPBase

Variant report

Variant rs12060754
Chromosome Location chr1:95309195-95309196
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:42 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:95286600-95311800 Weak transcription Placenta Placenta
2 chr1:95286600-95319800 Weak transcription Lung lung
3 chr1:95287000-95319800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
4 chr1:95287800-95320200 Weak transcription Rectal Smooth Muscle rectum
5 chr1:95288400-95312400 Weak transcription Fetal Muscle Leg muscle
6 chr1:95289200-95314800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
7 chr1:95289200-95318600 Weak transcription HSMMtube muscle
8 chr1:95293600-95319800 Weak transcription Esophagus oesophagus
9 chr1:95293600-95320000 Weak transcription Duodenum Smooth Muscle Duodenum
10 chr1:95294000-95320400 Weak transcription Small Intestine intestine
11 chr1:95299200-95312800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
12 chr1:95301800-95328600 Strong transcription Fetal Intestine Large intestine
13 chr1:95303800-95316800 Weak transcription Left Ventricle heart
14 chr1:95304400-95314600 Weak transcription Pancreatic Islets Pancreatic Islet
15 chr1:95305400-95318200 Strong transcription Rectal Mucosa Donor 29 rectum
16 chr1:95305600-95315800 Weak transcription Brain Anterior Caudate brain
17 chr1:95305800-95311200 Strong transcription H1 Derived Mesenchymal Stem Cells ES cell derived
18 chr1:95306000-95309800 Strong transcription Pancreas Pancrea
19 chr1:95306200-95309400 Strong transcription Fetal Stomach stomach
20 chr1:95306200-95318200 Strong transcription Sigmoid Colon Sigmoid Colon
21 chr1:95306200-95318800 Strong transcription Rectal Mucosa Donor 31 rectum
22 chr1:95306600-95320200 Weak transcription Aorta Aorta
23 chr1:95307000-95310000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
24 chr1:95307200-95310000 Weak transcription Fetal Kidney kidney
25 chr1:95307400-95319800 Weak transcription iPS-15b Cell Line embryonic stem cell
26 chr1:95308000-95310400 Enhancers Thymus Thymus
27 chr1:95308400-95319800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
28 chr1:95308400-95320200 Weak transcription HepG2 liver
29 chr1:95308400-95320400 Weak transcription Stomach Mucosa stomach
30 chr1:95308600-95309200 Flanking Active TSS Fetal Thymus thymus
31 chr1:95308600-95310200 Enhancers Fetal Adrenal Gland Adrenal Gland
32 chr1:95308600-95312200 Weak transcription Placenta Amnion Placenta Amnion
33 chr1:95308800-95309400 Genic enhancers Fetal Intestine Small intestine
34 chr1:95308800-95310200 Enhancers Fetal Heart heart
35 chr1:95308800-95310400 Weak transcription Breast Myoepithelial Primary Cells Breast
36 chr1:95308800-95312000 Weak transcription Colonic Mucosa Colon
37 chr1:95308800-95312400 Weak transcription Fetal Muscle Trunk muscle
38 chr1:95309000-95309200 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
39 chr1:95309000-95309200 Enhancers Right Ventricle heart
40 chr1:95309000-95309400 Enhancers Gastric stomach
41 chr1:95309000-95309400 Enhancers Spleen Spleen
42 chr1:95309000-95309800 Weak transcription Duodenum Mucosa Duodenum

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Last update: Aug 31, 2015