Variant report

Variant	rs74101533
Chromosome Location	chr1:95278896-95278897
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:95276233..95280832-chr1:95282185..95286731,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000224081	Chromatin interaction
ENSG00000143036	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11165239	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11165244	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11165250	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11165255	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11165257	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12057287	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12058606	1.00[EUR][1000 genomes]
rs12058766	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12059284	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12059919	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12060754	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12063764	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12077638	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12078728	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12079200	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12081570	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12083162	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12085965	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12086647	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12086825	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12089732	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12091334	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12091567	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12095617	1.00[EUR][1000 genomes]
rs3916208	1.00[EUR][1000 genomes]
rs3931243	1.00[EUR][1000 genomes]
rs56004399	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56075866	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56088880	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56252039	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56989877	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58484675	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59906561	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60642625	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61371315	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61634360	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6665321	1.00[EUR][1000 genomes]
rs72956408	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72956422	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72956423	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72956425	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72974472	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72974480	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74101525	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74101528	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74101530	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74101532	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74101536	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74101553	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74101555	0.95[AFR][1000 genomes]
rs74101559	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74101566	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74101887	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7540383	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001587	chr1:95027691-95318680	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95258200-95284800	Weak transcription	Gastric	stomach
2	chr1:95268200-95285000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:95269000-95282400	Weak transcription	Right Atrium	heart
4	chr1:95270000-95285000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:95270400-95284800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr1:95272400-95285000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr1:95272600-95284800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr1:95272600-95284800	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr1:95272600-95285400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr1:95274200-95284000	Weak transcription	Duodenum Mucosa	Duodenum
11	chr1:95274800-95281800	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr1:95274800-95283400	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr1:95274800-95285200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr1:95275200-95280000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr1:95275200-95285400	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr1:95278000-95279400	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr1:95278200-95279200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
18	chr1:95278600-95279600	ZNF genes & repeats	Fetal Intestine Small	intestine
19	chr1:95278800-95279000	ZNF genes & repeats	Fetal Intestine Large	intestine
20	chr1:95278800-95279400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
21	chr1:95278800-95279400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
22	chr1:95278800-95279600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
23	chr1:95278800-95281000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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