Variant report

Variant	rs12091567
Chromosome Location	chr1:95223763-95223764
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:95219225..95221753-chr1:95222349..95224941,2	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11165239	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11165244	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11165250	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11165255	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11165257	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12057287	1.00[EUR][1000 genomes]
rs12058606	1.00[EUR][1000 genomes]
rs12058766	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12059284	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12059919	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12060754	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12063764	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12077638	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12078728	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12079200	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12081570	1.00[EUR][1000 genomes]
rs12083162	1.00[EUR][1000 genomes]
rs12085965	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12086647	1.00[EUR][1000 genomes]
rs12086825	1.00[EUR][1000 genomes]
rs12089732	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12091334	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12095617	1.00[EUR][1000 genomes]
rs3916208	1.00[EUR][1000 genomes]
rs3931243	1.00[EUR][1000 genomes]
rs56004399	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56075866	1.00[EUR][1000 genomes]
rs56088880	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56252039	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56989877	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58484675	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59906561	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60642625	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61371315	1.00[EUR][1000 genomes]
rs61634360	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6665321	1.00[EUR][1000 genomes]
rs72956408	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72956422	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72956423	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72956425	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72974472	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72974476	0.87[AFR][1000 genomes]
rs72974480	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74101525	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74101528	1.00[EUR][1000 genomes]
rs74101530	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74101532	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74101533	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74101536	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74101553	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74101559	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74101566	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74101887	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7540383	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001587	chr1:95027691-95318680	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95218600-95223800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr1:95218600-95224400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:95218800-95223800	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr1:95218800-95223800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr1:95218800-95223800	Enhancers	NH-A	brain
6	chr1:95218800-95224000	Enhancers	NHDF-Ad	bronchial
7	chr1:95218800-95224000	Enhancers	NHLF	lung
8	chr1:95219600-95225400	Enhancers	HepG2	liver
9	chr1:95220400-95223800	Enhancers	Left Ventricle	heart
10	chr1:95221200-95224000	Enhancers	Placenta	Placenta
11	chr1:95221200-95224200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr1:95221400-95224000	Enhancers	Ovary	ovary
13	chr1:95221400-95234600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr1:95221600-95239000	Weak transcription	Fetal Intestine Large	intestine
15	chr1:95222000-95234000	Weak transcription	Fetal Intestine Small	intestine
16	chr1:95222200-95224200	Enhancers	Pancreas	Pancrea
17	chr1:95222800-95223800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr1:95223000-95223800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr1:95223000-95223800	Enhancers	Fetal Muscle Leg	muscle
20	chr1:95223000-95223800	Enhancers	Rectal Mucosa Donor 29	rectum
21	chr1:95223000-95223800	Enhancers	Right Ventricle	heart
22	chr1:95223000-95224000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr1:95223000-95224000	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr1:95223000-95224000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr1:95223000-95224000	Enhancers	Fetal Muscle Trunk	muscle
26	chr1:95223000-95224400	Enhancers	Fetal Kidney	kidney
27	chr1:95223000-95225400	Enhancers	Liver	Liver
28	chr1:95223200-95223800	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr1:95223200-95223800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr1:95223200-95223800	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr1:95223200-95224000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr1:95223200-95224000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr1:95223200-95224000	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr1:95223400-95223800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr1:95223400-95223800	Enhancers	HUES48 Cell Line	embryonic stem cell
36	chr1:95223400-95223800	Enhancers	iPS-15b Cell Line	embryonic stem cell
37	chr1:95223400-95223800	Enhancers	iPS-20b Cell Line	embryonic stem cell
38	chr1:95223400-95223800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr1:95223400-95223800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr1:95223400-95223800	Enhancers	Muscle Satellite Cultured Cells	--
41	chr1:95223400-95223800	Enhancers	Aorta	Aorta
42	chr1:95223400-95223800	Flanking Active TSS	Osteobl	bone
43	chr1:95223400-95224000	Enhancers	HUES64 Cell Line	embryonic stem cell
44	chr1:95223600-95223800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr1:95223600-95223800	Flanking Active TSS	Adipose Nuclei	Adipose
46	chr1:95223600-95223800	Enhancers	Gastric	stomach
47	chr1:95223600-95224000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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