Variant report

Variant	rs74101525
Chromosome Location	chr1:95258575-95258576
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs11165239	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11165244	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11165250	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11165255	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11165257	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12057287	1.00[EUR][1000 genomes]
rs12058606	1.00[EUR][1000 genomes]
rs12058766	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12059284	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12059919	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12060754	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12063764	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12077638	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12078728	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12079200	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12081570	1.00[EUR][1000 genomes]
rs12083162	1.00[EUR][1000 genomes]
rs12085965	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12086647	1.00[EUR][1000 genomes]
rs12086825	1.00[EUR][1000 genomes]
rs12089732	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12091334	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12091567	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12095617	1.00[EUR][1000 genomes]
rs3916208	1.00[EUR][1000 genomes]
rs3931243	1.00[EUR][1000 genomes]
rs56004399	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56075866	1.00[EUR][1000 genomes]
rs56088880	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56252039	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56989877	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58484675	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59906561	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60642625	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61371315	1.00[EUR][1000 genomes]
rs61634360	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6665321	1.00[EUR][1000 genomes]
rs72956408	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72956422	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72956423	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72956425	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72974472	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72974480	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74101528	1.00[EUR][1000 genomes]
rs74101530	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74101532	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74101533	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74101536	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74101553	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74101559	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74101566	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74101887	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7540383	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001587	chr1:95027691-95318680	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95242600-95268000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr1:95243200-95265000	Weak transcription	Fetal Intestine Large	intestine
3	chr1:95249200-95260800	Weak transcription	Right Atrium	heart
4	chr1:95251000-95271600	Weak transcription	Small Intestine	intestine
5	chr1:95255600-95261000	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr1:95255800-95259000	Enhancers	NHLF	lung
7	chr1:95256000-95259600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:95256000-95259600	Enhancers	HMEC	breast
9	chr1:95256000-95259800	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr1:95256000-95264800	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr1:95256800-95265800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr1:95257000-95259400	Enhancers	Primary B cells from cord blood	blood
13	chr1:95257000-95261600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr1:95257400-95258600	Enhancers	GM12878-XiMat	blood
15	chr1:95257400-95258800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr1:95257400-95258800	Enhancers	Osteobl	bone
17	chr1:95257400-95259400	Enhancers	Brain Anterior Caudate	brain
18	chr1:95257400-95259400	Enhancers	Brain Hippocampus Middle	brain
19	chr1:95257400-95259400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr1:95257400-95259400	Enhancers	HSMMtube	muscle
21	chr1:95257400-95262000	Enhancers	Primary B cells from peripheral blood	blood
22	chr1:95257600-95259000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr1:95257600-95259200	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr1:95257600-95259400	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr1:95257600-95259400	Enhancers	Colon Smooth Muscle	Colon
26	chr1:95257600-95259400	Enhancers	Hela-S3	cervix
27	chr1:95257600-95259600	Enhancers	Adipose Nuclei	Adipose
28	chr1:95257800-95259000	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr1:95257800-95259200	Enhancers	NHEK	skin
30	chr1:95257800-95259400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr1:95257800-95259400	Enhancers	Brain Angular Gyrus	brain
32	chr1:95257800-95259400	Enhancers	Brain Cingulate Gyrus	brain
33	chr1:95257800-95259400	Enhancers	Brain Substantia Nigra	brain
34	chr1:95257800-95259400	Enhancers	Rectal Smooth Muscle	rectum
35	chr1:95257800-95259400	Enhancers	Stomach Mucosa	stomach
36	chr1:95257800-95259600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
37	chr1:95257800-95259600	Enhancers	Skeletal Muscle Female	skeletal muscle
38	chr1:95257800-95259600	Enhancers	HepG2	liver
39	chr1:95258000-95258800	Enhancers	Primary hematopoietic stem cells	blood
40	chr1:95258000-95259000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr1:95258000-95259000	Flanking Active TSS	NH-A	brain
42	chr1:95258000-95259200	Enhancers	Fetal Muscle Leg	muscle
43	chr1:95258000-95259200	Enhancers	Rectal Mucosa Donor 29	rectum
44	chr1:95258000-95259400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr1:95258000-95259400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr1:95258000-95259400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr1:95258000-95259400	Enhancers	Fetal Heart	heart
48	chr1:95258000-95259400	Enhancers	Placenta Amnion	Placenta Amnion
49	chr1:95258000-95259400	Enhancers	Skeletal Muscle Male	skeletal muscle
50	chr1:95258000-95259400	Flanking Active TSS	NHDF-Ad	bronchial

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