Variant report

Variant	rs11169528
Chromosome Location	chr12:51106202-51106203
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:51102550..51105229-chr12:51105773..51108053,2	K562	blood:

Extended variants
information (count: 138 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:138)

rs_ID	r²[population]
rs1003033	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10431486	0.85[EUR][1000 genomes]
rs10431535	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10444547	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10459233	0.82[EUR][1000 genomes]
rs10459234	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10459235	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10506294	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10506295	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10747584	0.82[EUR][1000 genomes]
rs10747585	0.85[EUR][1000 genomes]
rs10747587	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10783369	0.85[EUR][1000 genomes]
rs10783370	0.85[EUR][1000 genomes]
rs10783371	0.85[EUR][1000 genomes]
rs10783372	0.85[EUR][1000 genomes]
rs10783373	0.84[EUR][1000 genomes]
rs10783374	0.85[EUR][1000 genomes]
rs10783378	0.85[EUR][1000 genomes]
rs10783381	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10783382	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10783383	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10783384	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10783389	0.87[ASN][1000 genomes]
rs10876042	0.83[EUR][1000 genomes]
rs10876043	0.83[EUR][1000 genomes]
rs10876047	0.85[EUR][1000 genomes]
rs10876051	0.85[EUR][1000 genomes]
rs10876052	0.85[EUR][1000 genomes]
rs10876053	0.85[EUR][1000 genomes]
rs10876056	0.84[EUR][1000 genomes]
rs10876058	0.85[EUR][1000 genomes]
rs10876060	0.84[EUR][1000 genomes]
rs10876061	0.85[EUR][1000 genomes]
rs10876063	0.85[EUR][1000 genomes]
rs10876065	0.85[EUR][1000 genomes]
rs10876070	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10876071	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10876072	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10876073	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10876075	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10876076	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10876080	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10876081	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10876089	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10876090	0.85[ASN][1000 genomes]
rs10876094	0.88[ASN][1000 genomes]
rs10876095	0.88[ASN][1000 genomes]
rs10876096	0.88[ASN][1000 genomes]
rs10876097	0.88[ASN][1000 genomes]
rs11169479	0.85[EUR][1000 genomes]
rs11169480	0.85[EUR][1000 genomes]
rs11169481	0.84[EUR][1000 genomes]
rs11169483	0.80[EUR][1000 genomes]
rs11169487	0.85[EUR][1000 genomes]
rs11169493	0.85[EUR][1000 genomes]
rs11169498	0.83[EUR][1000 genomes]
rs11169505	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11169507	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11169515	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11169532	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11169537	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11169538	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11169539	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11169544	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11169552	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11169554	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11169560	0.84[ASN][1000 genomes]
rs11169561	0.85[ASN][1000 genomes]
rs11613488	0.85[EUR][1000 genomes]
rs11615933	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12230242	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12231309	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12231317	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12424860	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12580051	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12580479	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12582712	0.85[EUR][1000 genomes]
rs12809086	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12827022	0.83[EUR][1000 genomes]
rs1344958	0.87[ASN][1000 genomes]
rs17124930	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2090851	0.87[EUR][1000 genomes]
rs2243571	0.81[EUR][1000 genomes]
rs2264734	0.83[EUR][1000 genomes]
rs2684908	0.85[EUR][1000 genomes]
rs34867510	0.82[EUR][1000 genomes]
rs35845404	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3742063	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3742064	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3809319	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3825402	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3893353	0.85[EUR][1000 genomes]
rs3935869	0.83[EUR][1000 genomes]
rs4026593	0.88[ASN][1000 genomes]
rs4131769	0.85[EUR][1000 genomes]
rs4238106	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4238108	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4307773	0.94[ASN][1000 genomes]
rs4516034	0.85[EUR][1000 genomes]
rs4768850	0.85[EUR][1000 genomes]
rs4768852	0.84[EUR][1000 genomes]
rs4768853	0.85[EUR][1000 genomes]
rs4768858	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4768866	0.86[ASN][1000 genomes]
rs4768884	0.85[EUR][1000 genomes]
rs4768888	0.85[EUR][1000 genomes]
rs4768889	0.85[EUR][1000 genomes]
rs4768892	0.85[EUR][1000 genomes]
rs4768893	0.85[EUR][1000 genomes]
rs4768895	0.85[EUR][1000 genomes]
rs4768899	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4768904	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4768906	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4768907	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4768911	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4768912	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4768913	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4768914	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4768917	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4768921	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4768922	0.88[ASN][1000 genomes]
rs4768923	0.87[ASN][1000 genomes]
rs55680342	0.84[EUR][1000 genomes]
rs55877451	0.84[EUR][1000 genomes]
rs61926275	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6580761	0.86[EUR][1000 genomes]
rs7134976	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7138604	0.85[EUR][1000 genomes]
rs7307419	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73094900	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73096846	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7956591	0.85[EUR][1000 genomes]
rs876078	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs876079	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs876080	0.81[EUR][1000 genomes]
rs952318	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9788159	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11169528	DIP2B	cis	Thyroid	GTEx

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:51049200-51108600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr12:51060200-51108200	Weak transcription	Stomach Mucosa	stomach
3	chr12:51063200-51138600	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr12:51063600-51138800	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr12:51063600-51145400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
6	chr12:51064000-51109800	Strong transcription	Primary B cells from peripheral blood	blood
7	chr12:51064000-51127400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr12:51067400-51120600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr12:51067400-51143600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr12:51067600-51142200	Strong transcription	Primary T helper cells fromperipheralblood	blood
11	chr12:51068200-51141200	Strong transcription	Placenta	Placenta
12	chr12:51068200-51144000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr12:51074600-51109800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr12:51074600-51139600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr12:51079200-51120600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr12:51080200-51145400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr12:51083400-51126000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr12:51085600-51118400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr12:51086200-51109800	Strong transcription	Fetal Muscle Trunk	muscle
20	chr12:51086200-51140800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr12:51086200-51142600	Strong transcription	Primary T helper cells PMA-I stimulated	--
22	chr12:51086400-51113400	Strong transcription	Cortex derived primary cultured neurospheres	brain
23	chr12:51090400-51145400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr12:51090600-51138400	Strong transcription	Primary neutrophils fromperipheralblood	blood
25	chr12:51093400-51108200	Strong transcription	Liver	Liver
26	chr12:51093600-51128600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr12:51096000-51142000	Strong transcription	Fetal Muscle Leg	muscle
28	chr12:51096200-51144600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr12:51096600-51110200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr12:51096600-51111000	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr12:51096800-51109600	Strong transcription	HepG2	liver
32	chr12:51096800-51113400	Strong transcription	Duodenum Mucosa	Duodenum
33	chr12:51097000-51110000	Strong transcription	Primary hematopoietic stem cells	blood
34	chr12:51097000-51110000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr12:51097200-51106800	Strong transcription	Brain Anterior Caudate	brain
36	chr12:51097200-51109800	Strong transcription	HUES64 Cell Line	embryonic stem cell
37	chr12:51097400-51109200	Strong transcription	NH-A	brain
38	chr12:51098800-51128200	Strong transcription	Brain Germinal Matrix	brain
39	chr12:51099000-51109200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr12:51099400-51112000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr12:51099600-51112200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr12:51099600-51117400	Weak transcription	Psoas Muscle	Psoas
43	chr12:51100000-51112200	Weak transcription	Fetal Brain Male	brain
44	chr12:51100600-51106400	Strong transcription	Stomach Smooth Muscle	stomach
45	chr12:51101000-51144800	Strong transcription	Fetal Stomach	stomach
46	chr12:51101200-51114000	Strong transcription	Fetal Intestine Small	intestine
47	chr12:51102000-51116800	Weak transcription	Small Intestine	intestine
48	chr12:51102400-51108200	Weak transcription	Right Ventricle	heart
49	chr12:51102600-51107800	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr12:51102600-51108000	Weak transcription	H1 Cell Line	embryonic stem cell

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