Variant report

Variant	rs11169515
Chromosome Location	chr12:51053515-51053516
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:51053432..51055434-chr12:51071849..51073554,2	MCF-7	breast:
2	chr12:51051582..51054443-chr12:51056838..51059064,2	K562	blood:
3	chr12:51052943..51055558-chr12:51057564..51059354,2	K562	blood:
4	chr12:51053503..51055598-chr12:51063289..51065547,2	MCF-7	breast:

Extended variants
information (count: 133 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:133)

rs_ID	r²[population]
rs1003033	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10431486	0.87[EUR][1000 genomes]
rs10431535	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10444547	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10459233	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs10459234	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10459235	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10506294	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10506295	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10747584	0.84[EUR][1000 genomes]
rs10747585	0.87[EUR][1000 genomes]
rs10747587	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10783369	0.86[EUR][1000 genomes]
rs10783370	0.87[EUR][1000 genomes]
rs10783371	0.87[EUR][1000 genomes]
rs10783372	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.87[EUR][1000 genomes]
rs10783373	1.00[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap];0.86[EUR][1000 genomes]
rs10783374	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10783378	0.87[EUR][1000 genomes]
rs10783381	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10783382	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10783383	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10783384	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10783389	0.86[CHB][hapmap]
rs10876042	0.83[EUR][1000 genomes]
rs10876043	0.84[EUR][1000 genomes]
rs10876047	1.00[CEU][hapmap];0.82[CHB][hapmap];0.84[JPT][hapmap];0.87[EUR][1000 genomes]
rs10876051	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.86[EUR][1000 genomes]
rs10876052	1.00[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.86[EUR][1000 genomes]
rs10876053	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.87[EUR][1000 genomes]
rs10876056	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.86[EUR][1000 genomes]
rs10876058	0.87[EUR][1000 genomes]
rs10876060	0.85[EUR][1000 genomes]
rs10876061	0.86[CHB][hapmap];0.89[JPT][hapmap];0.87[EUR][1000 genomes]
rs10876063	0.87[EUR][1000 genomes]
rs10876065	1.00[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10876067	0.84[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10876068	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10876070	1.00[CEU][hapmap];0.81[CHB][hapmap];0.87[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10876071	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10876072	1.00[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10876073	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10876075	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10876076	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10876095	0.83[CHB][hapmap]
rs10876096	0.86[CHB][hapmap]
rs10876097	0.86[CHB][hapmap]
rs11169479	1.00[CEU][hapmap];0.82[CHB][hapmap];0.83[JPT][hapmap];0.87[EUR][1000 genomes]
rs11169480	0.87[EUR][1000 genomes]
rs11169481	1.00[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap];0.85[EUR][1000 genomes]
rs11169483	0.82[EUR][1000 genomes]
rs11169487	0.87[EUR][1000 genomes]
rs11169493	1.00[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap];0.86[EUR][1000 genomes]
rs11169498	0.84[EUR][1000 genomes]
rs11169505	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11169507	1.00[CEU][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11169528	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11169532	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11169537	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11169538	0.93[CEU][hapmap];0.85[YRI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11169539	0.89[CEU][hapmap];0.88[YRI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11169544	0.81[CHB][hapmap]
rs11169552	0.86[CHB][hapmap]
rs11169560	0.86[CHB][hapmap]
rs11169561	0.90[CHB][hapmap]
rs11613488	1.00[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11615933	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12230242	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12231309	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12231317	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12580051	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12580479	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12582712	0.87[EUR][1000 genomes]
rs12809086	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12827022	0.84[EUR][1000 genomes]
rs1344958	0.86[CHB][hapmap]
rs17124930	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2090851	0.83[EUR][1000 genomes]
rs2243571	0.84[EUR][1000 genomes]
rs2684908	0.90[CEU][hapmap];0.86[EUR][1000 genomes]
rs2700478	0.83[EUR][1000 genomes]
rs34867510	0.83[EUR][1000 genomes]
rs35845404	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3742063	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3742064	0.90[CEU][hapmap];0.91[CHB][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3809319	0.86[CHB][hapmap]
rs3825402	0.90[CEU][hapmap];0.86[CHB][hapmap];0.88[YRI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3893353	0.87[EUR][1000 genomes]
rs3935138	0.89[CEU][hapmap]
rs3935869	0.84[EUR][1000 genomes]
rs4131769	1.00[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap];0.87[EUR][1000 genomes]
rs4238106	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4238108	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4307773	0.81[CHB][hapmap]
rs4516034	0.87[EUR][1000 genomes]
rs4768850	0.87[EUR][1000 genomes]
rs4768852	0.86[EUR][1000 genomes]
rs4768853	1.00[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4768858	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4768866	0.85[CHB][hapmap]
rs4768884	0.87[EUR][1000 genomes]
rs4768888	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.87[EUR][1000 genomes]
rs4768889	0.87[EUR][1000 genomes]
rs4768892	0.87[EUR][1000 genomes]
rs4768893	0.87[EUR][1000 genomes]
rs4768895	0.87[EUR][1000 genomes]
rs4768899	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4768903	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs4768904	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4768906	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4768907	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4768911	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4768912	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4768913	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4768914	0.94[CEU][hapmap];0.86[CHB][hapmap];0.88[YRI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4768922	0.86[CHB][hapmap]
rs4768924	0.81[CHB][hapmap]
rs4768925	0.81[CHB][hapmap]
rs55680342	0.85[EUR][1000 genomes]
rs55877451	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61926275	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6580761	0.90[CEU][hapmap];0.82[EUR][1000 genomes]
rs7134976	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7138604	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.87[EUR][1000 genomes]
rs7305375	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs7307419	1.00[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7316864	0.86[CEU][hapmap]
rs7956591	1.00[CEU][hapmap];0.85[CHB][hapmap];0.80[JPT][hapmap];0.87[EUR][1000 genomes]
rs876078	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs876079	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs876080	0.90[CEU][hapmap];0.84[EUR][1000 genomes]
rs952318	1.00[CEU][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9788159	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11169515	DIP2B	cis	Thyroid	GTEx

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:51013400-51055200	Weak transcription	Aorta	Aorta
2	chr12:51015600-51075800	Weak transcription	Colonic Mucosa	Colon
3	chr12:51016000-51065000	Weak transcription	Esophagus	oesophagus
4	chr12:51022000-51065200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr12:51022000-51068400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr12:51022400-51055200	Weak transcription	Ovary	ovary
7	chr12:51022600-51054000	Weak transcription	Duodenum Mucosa	Duodenum
8	chr12:51022600-51064600	Weak transcription	Stomach Smooth Muscle	stomach
9	chr12:51028400-51092400	Weak transcription	Gastric	stomach
10	chr12:51030800-51064800	Weak transcription	Spleen	Spleen
11	chr12:51030800-51065000	Weak transcription	Left Ventricle	heart
12	chr12:51031400-51058800	Weak transcription	Small Intestine	intestine
13	chr12:51031400-51064800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr12:51031800-51068200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr12:51032200-51065000	Weak transcription	Fetal Lung	lung
16	chr12:51032200-51069000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr12:51032600-51055000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr12:51035600-51053600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr12:51035600-51054000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr12:51035600-51064600	Weak transcription	Lung	lung
21	chr12:51036000-51068200	Weak transcription	Thymus	Thymus
22	chr12:51036200-51054000	Weak transcription	Fetal Thymus	thymus
23	chr12:51036200-51054400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr12:51036200-51054400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr12:51036200-51055400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr12:51036200-51057800	Weak transcription	Hela-S3	cervix
27	chr12:51036200-51068200	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr12:51036800-51070000	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr12:51037000-51058200	Weak transcription	Fetal Intestine Small	intestine
30	chr12:51037200-51054000	Weak transcription	Adipose Nuclei	Adipose
31	chr12:51037600-51054000	Weak transcription	Fetal Muscle Leg	muscle
32	chr12:51038000-51053800	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr12:51038000-51064800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr12:51038200-51053800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr12:51038200-51054000	Weak transcription	Primary T helper cells PMA-I stimulated	--
36	chr12:51038200-51055200	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr12:51038200-51055400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr12:51038400-51053600	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr12:51038600-51054000	Weak transcription	Primary hematopoietic stem cells	blood
40	chr12:51039600-51054000	Weak transcription	Placenta	Placenta
41	chr12:51039600-51054200	Weak transcription	Primary B cells from cord blood	blood
42	chr12:51041200-51067200	Weak transcription	Fetal Stomach	stomach
43	chr12:51041400-51053600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr12:51041400-51053800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr12:51041400-51054400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr12:51041400-51055000	Weak transcription	HSMMtube	muscle
47	chr12:51041400-51055200	Weak transcription	Fetal Intestine Large	intestine
48	chr12:51041400-51065000	Weak transcription	K562	blood
49	chr12:51041400-51068000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr12:51041600-51053600	Weak transcription	Rectal Mucosa Donor 31	rectum

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