The 2.0 version of rSNPBase

Variant report

Variant rs11466321
Chromosome Location chr19:41854916-41854917
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:102 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:41832400-41856000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
2 chr19:41834200-41856600 Weak transcription Brain Anterior Caudate brain
3 chr19:41834200-41856800 Weak transcription Fetal Kidney kidney
4 chr19:41834800-41855600 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
5 chr19:41834800-41856800 Weak transcription Brain Cingulate Gyrus brain
6 chr19:41834800-41856800 Weak transcription Brain Substantia Nigra brain
7 chr19:41835000-41856600 Weak transcription Brain Inferior Temporal Lobe brain
8 chr19:41835000-41856800 Weak transcription Brain Angular Gyrus brain
9 chr19:41835600-41856000 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
10 chr19:41836000-41855200 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
11 chr19:41837800-41855800 Weak transcription HUES64 Cell Line embryonic stem cell
12 chr19:41838600-41856600 Weak transcription ES-I3 Cell Line embryonic stem cell
13 chr19:41840800-41855800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
14 chr19:41841800-41856600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
15 chr19:41845800-41856000 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
16 chr19:41846400-41855000 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
17 chr19:41846400-41855000 Genic enhancers Primary T helper 17 cells PMA-I stimulated --
18 chr19:41847000-41855800 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
19 chr19:41848200-41855000 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
20 chr19:41848200-41855200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
21 chr19:41848200-41856600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
22 chr19:41848200-41856600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
23 chr19:41848200-41857000 Weak transcription Pancreas Pancrea
24 chr19:41848400-41857000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
25 chr19:41848800-41855000 Strong transcription K562 blood
26 chr19:41848800-41856000 Strong transcription NHEK skin
27 chr19:41850600-41855200 Weak transcription iPS-15b Cell Line embryonic stem cell
28 chr19:41850600-41856800 Weak transcription Breast Myoepithelial Primary Cells Breast
29 chr19:41850800-41855600 Weak transcription Fetal Lung lung
30 chr19:41850800-41856400 Weak transcription NHLF lung
31 chr19:41850800-41856600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
32 chr19:41851000-41855000 Weak transcription Skeletal Muscle Male skeletal muscle
33 chr19:41851000-41855200 Weak transcription Fetal Intestine Small intestine
34 chr19:41851000-41855800 Weak transcription Right Ventricle heart
35 chr19:41851000-41856400 Weak transcription Gastric stomach
36 chr19:41851000-41856600 Weak transcription Brain Hippocampus Middle brain
37 chr19:41851000-41856600 Weak transcription Rectal Mucosa Donor 31 rectum
38 chr19:41851000-41856600 Weak transcription HMEC breast
39 chr19:41851000-41856600 Weak transcription HSMM muscle
40 chr19:41851000-41856800 Weak transcription Ovary ovary
41 chr19:41851200-41855800 Weak transcription Esophagus oesophagus
42 chr19:41851200-41855800 Weak transcription Lung lung
43 chr19:41851200-41856200 Weak transcription Colonic Mucosa Colon
44 chr19:41851200-41856400 Weak transcription HUES6 Cell Line embryonic stem cell
45 chr19:41851200-41856400 Weak transcription HepG2 liver
46 chr19:41851200-41856800 Weak transcription HSMMtube muscle
47 chr19:41852200-41855800 Strong transcription A549 lung
48 chr19:41852400-41855000 Genic enhancers Primary T helper naive cells from peripheral blood blood
49 chr19:41852400-41855200 Weak transcription Liver Liver
50 chr19:41852400-41856000 Genic enhancers Primary B cells from peripheral blood blood

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Last update: Aug 31, 2015