The 2.0 version of rSNPBase

Variant report

Variant rs58479032
Chromosome Location chr19:41865413-41865414
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:87 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:41859800-41868200 Weak transcription Sigmoid Colon Sigmoid Colon
2 chr19:41860200-41869000 Weak transcription Gastric stomach
3 chr19:41860400-41865800 Enhancers Primary T cells fromperipheralblood blood
4 chr19:41860400-41868200 Weak transcription Rectal Mucosa Donor 31 rectum
5 chr19:41860400-41868600 Weak transcription GM12878-XiMat blood
6 chr19:41860400-41868800 Weak transcription Hela-S3 cervix
7 chr19:41860400-41869000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
8 chr19:41860400-41869000 Weak transcription Brain Angular Gyrus brain
9 chr19:41860400-41869000 Weak transcription Rectal Smooth Muscle rectum
10 chr19:41860400-41869200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
11 chr19:41860400-41869200 Weak transcription Cortex derived primary cultured neurospheres brain
12 chr19:41860400-41869200 Weak transcription HSMMtube muscle
13 chr19:41860400-41869200 Weak transcription HUVEC blood vessel
14 chr19:41860400-41869200 Weak transcription NHDF-Ad bronchial
15 chr19:41860400-41869200 Weak transcription NHLF lung
16 chr19:41860400-41869400 Weak transcription Aorta Aorta
17 chr19:41860400-41869400 Weak transcription Ovary ovary
18 chr19:41860600-41866800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
19 chr19:41860600-41866800 Weak transcription A549 lung
20 chr19:41860600-41868200 Weak transcription Fetal Intestine Small intestine
21 chr19:41860600-41868200 Weak transcription Rectal Mucosa Donor 29 rectum
22 chr19:41860600-41868400 Weak transcription Duodenum Mucosa Duodenum
23 chr19:41860600-41868600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
24 chr19:41860600-41868800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
25 chr19:41860600-41869000 Weak transcription Duodenum Smooth Muscle Duodenum
26 chr19:41860600-41869200 Weak transcription Muscle Satellite Cultured Cells --
27 chr19:41860600-41869200 Weak transcription Brain Substantia Nigra brain
28 chr19:41860600-41869200 Weak transcription Esophagus oesophagus
29 chr19:41860600-41869200 Weak transcription Osteobl bone
30 chr19:41860800-41868600 Weak transcription Pancreas Pancrea
31 chr19:41860800-41869200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
32 chr19:41860800-41869200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
33 chr19:41860800-41869200 Weak transcription Placenta Amnion Placenta Amnion
34 chr19:41860800-41869200 Weak transcription Right Ventricle heart
35 chr19:41861000-41868400 Weak transcription Dnd41 blood
36 chr19:41861000-41868600 Weak transcription Fetal Brain Female brain
37 chr19:41861000-41869200 Weak transcription Liver Liver
38 chr19:41861200-41869200 Weak transcription Fetal Kidney kidney
39 chr19:41861400-41869000 Weak transcription Breast Myoepithelial Primary Cells Breast
40 chr19:41861600-41868400 Weak transcription K562 blood
41 chr19:41861600-41868800 Weak transcription Stomach Smooth Muscle stomach
42 chr19:41862000-41866800 Weak transcription Fetal Stomach stomach
43 chr19:41862000-41869000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
44 chr19:41862000-41869000 Weak transcription Brain Anterior Caudate brain
45 chr19:41862000-41869000 Weak transcription Brain Hippocampus Middle brain
46 chr19:41862000-41869200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
47 chr19:41863000-41868600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
48 chr19:41863000-41868800 Weak transcription Fetal Adrenal Gland Adrenal Gland
49 chr19:41863200-41868200 Weak transcription Stomach Mucosa stomach
50 chr19:41863200-41869000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived

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Last update: Aug 31, 2015