The 2.0 version of rSNPBase

Variant report

Variant rs58921598
Chromosome Location chr19:41871779-41871780
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:93 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:41870200-41871800 Flanking Active TSS Primary neutrophils fromperipheralblood blood
2 chr19:41870600-41882000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
3 chr19:41870800-41874000 Weak transcription Esophagus oesophagus
4 chr19:41870800-41874000 Weak transcription Small Intestine intestine
5 chr19:41870800-41882000 Weak transcription H9 Cell Line embryonic stem cell
6 chr19:41871000-41872200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
7 chr19:41871000-41872200 Weak transcription Hela-S3 cervix
8 chr19:41871000-41872400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
9 chr19:41871000-41872400 Genic enhancers Fetal Intestine Small intestine
10 chr19:41871000-41872400 Enhancers Fetal Muscle Leg muscle
11 chr19:41871000-41872400 Weak transcription Placenta Placenta
12 chr19:41871000-41872600 Enhancers Fetal Thymus thymus
13 chr19:41871000-41872800 Weak transcription HMEC breast
14 chr19:41871000-41872800 Weak transcription NHLF lung
15 chr19:41871000-41873000 Weak transcription Osteobl bone
16 chr19:41871000-41873400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
17 chr19:41871000-41873400 Weak transcription Muscle Satellite Cultured Cells --
18 chr19:41871000-41873600 Weak transcription Stomach Mucosa stomach
19 chr19:41871000-41873600 Weak transcription HSMM muscle
20 chr19:41871000-41873600 Weak transcription NH-A brain
21 chr19:41871000-41873800 Weak transcription Rectal Mucosa Donor 31 rectum
22 chr19:41871000-41874000 Weak transcription Primary T killer memory cells from peripheral blood blood
23 chr19:41871000-41876600 Weak transcription Fetal Kidney kidney
24 chr19:41871000-41879800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
25 chr19:41871000-41879800 Weak transcription Rectal Mucosa Donor 29 rectum
26 chr19:41871000-41880000 Weak transcription HSMMtube muscle
27 chr19:41871000-41881800 Weak transcription Primary T helper cells fromperipheralblood blood
28 chr19:41871000-41882000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
29 chr19:41871000-41882000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
30 chr19:41871000-41882000 Weak transcription Primary T cells from cord blood blood
31 chr19:41871200-41872200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
32 chr19:41871200-41872200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
33 chr19:41871200-41872200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
34 chr19:41871200-41872200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
35 chr19:41871200-41872200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
36 chr19:41871200-41872200 Weak transcription Fetal Intestine Large intestine
37 chr19:41871200-41872200 Weak transcription Fetal Stomach stomach
38 chr19:41871200-41872200 Weak transcription Lung lung
39 chr19:41871200-41872200 Weak transcription GM12878-XiMat blood
40 chr19:41871200-41872200 Weak transcription HUVEC blood vessel
41 chr19:41871200-41873000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
42 chr19:41871200-41873000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
43 chr19:41871200-41873000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
44 chr19:41871200-41873000 Weak transcription NHDF-Ad bronchial
45 chr19:41871200-41873200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
46 chr19:41871200-41873200 Weak transcription Spleen Spleen
47 chr19:41871200-41873400 Weak transcription Primary B cells from peripheral blood blood
48 chr19:41871200-41873400 Weak transcription Pancreas Pancrea
49 chr19:41871200-41873600 Enhancers Primary hematopoietic stem cells short term culture blood
50 chr19:41871200-41873600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell

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Last update: Aug 31, 2015