Variant report

Variant	rs12536574
Chromosome Location	chr7:106810997-106810998
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:106682746..106686911-chr7:106807556..106811745,9	K562	blood:
2	chr7:106413235..106416729-chr7:106808294..106812162,5	K562	blood:
3	chr7:106806204..106812770-chr7:106813358..106822449,17	MCF-7	breast:
4	chr7:106808400..106812418-chr7:106824330..106827302,6	K562	blood:
5	chr7:106808413..106811737-chr7:107382761..107387306,8	K562	blood:
6	chr7:106806529..106812770-chr7:107382455..107386610,12	K562	blood:
7	chr7:106682031..106689663-chr7:106807150..106811711,11	K562	blood:
8	chr1:203691216..203693456-chr7:106809047..106812033,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000241764	Chromatin interaction
ENSG00000228742	Chromatin interaction
ENSG00000105879	Chromatin interaction
ENSG00000005249	Chromatin interaction
ENSG00000058668	Chromatin interaction
ENSG00000105856	Chromatin interaction

Extended variants
information (count: 138 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:135)

rs_ID	r²[population]
rs1002935	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1018946	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1018947	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10253172	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10253291	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10487271	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10953529	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10953530	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10953531	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10953533	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10953534	0.83[ASN][1000 genomes]
rs10953535	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1121312	0.83[ASN][1000 genomes]
rs11761181	0.84[ASN][1000 genomes]
rs11762152	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11764448	0.83[ASN][1000 genomes]
rs11767623	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11769527	0.83[ASN][1000 genomes]
rs11769861	0.83[ASN][1000 genomes]
rs11769901	0.83[ASN][1000 genomes]
rs11773514	0.82[ASN][1000 genomes]
rs12154285	0.83[ASN][1000 genomes]
rs12531187	0.83[ASN][1000 genomes]
rs12532447	0.84[ASN][1000 genomes]
rs12532953	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12532967	0.84[ASN][1000 genomes]
rs12533516	0.84[ASN][1000 genomes]
rs12533767	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12534000	0.83[ASN][1000 genomes]
rs12534676	0.81[ASN][1000 genomes]
rs12536485	0.84[ASN][1000 genomes]
rs12536491	0.84[ASN][1000 genomes]
rs12536603	0.82[ASN][1000 genomes]
rs12537374	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12537730	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12537733	0.83[ASN][1000 genomes]
rs12540475	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12705405	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1548523	0.81[ASN][1000 genomes]
rs1548524	0.81[ASN][1000 genomes]
rs17349904	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17350182	0.83[ASN][1000 genomes]
rs17427123	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17427158	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17427849	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17428071	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17428126	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17428504	0.83[ASN][1000 genomes]
rs17429118	0.83[ASN][1000 genomes]
rs17429146	0.83[ASN][1000 genomes]
rs1981696	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2023892	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2107318	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2107319	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2189501	0.84[ASN][1000 genomes]
rs2249043	0.81[ASN][1000 genomes]
rs2299422	0.83[ASN][1000 genomes]
rs257371	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs257372	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs257373	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs257375	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs257377	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs257378	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs257379	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs257381	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs257382	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs257385	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs257386	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs257387	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2894459	0.83[ASN][1000 genomes]
rs3729876	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3729877	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3779498	0.83[ASN][1000 genomes]
rs3779500	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3801958	0.81[ASN][1000 genomes]
rs3801959	0.83[ASN][1000 genomes]
rs3801963	0.83[ASN][1000 genomes]
rs3801965	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3815148	0.83[ASN][1000 genomes]
rs3823959	0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs3823960	0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs4727670	0.85[AMR][1000 genomes]
rs4727671	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4730222	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4730223	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4730224	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4730226	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4730227	0.82[ASN][1000 genomes]
rs4730228	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4730229	0.83[ASN][1000 genomes]
rs4730231	0.84[ASN][1000 genomes]
rs4730232	0.84[ASN][1000 genomes]
rs57525841	0.83[ASN][1000 genomes]
rs58319984	0.83[ASN][1000 genomes]
rs58663672	0.84[ASN][1000 genomes]
rs59900773	0.84[ASN][1000 genomes]
rs60255281	0.83[ASN][1000 genomes]
rs61014091	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61406169	0.83[ASN][1000 genomes]
rs61511581	0.83[ASN][1000 genomes]
rs61673847	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6466160	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6466162	0.83[ASN][1000 genomes]
rs6946036	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6946931	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6947675	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6947857	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6949961	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6951639	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6960148	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6960813	0.83[ASN][1000 genomes]
rs6963917	0.84[ASN][1000 genomes]
rs6964798	0.84[ASN][1000 genomes]
rs6964966	0.84[ASN][1000 genomes]
rs6965001	0.84[ASN][1000 genomes]
rs6967745	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6971675	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6971774	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6977868	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7777976	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7779062	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7781947	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7783181	0.84[ASN][1000 genomes]
rs7783562	0.81[ASN][1000 genomes]
rs7789500	0.82[ASN][1000 genomes]
rs7789678	0.89[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7793594	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7794915	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7794965	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7798223	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7800443	0.83[ASN][1000 genomes]
rs7803290	0.84[ASN][1000 genomes]
rs7981	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9641378	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs997311	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831087	chr7:106673465-106872460	Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv3383027	chr7:106802625-107096474	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	esv3355666	chr7:106810341-106812889	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12536574	GPR22	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:106807000-106811400	Active TSS	NHLF	lung
2	chr7:106807200-106811000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr7:106807200-106811000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr7:106807400-106811000	Active TSS	A549	lung
5	chr7:106807400-106811200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr7:106807400-106811200	Active TSS	Fetal Intestine Large	intestine
7	chr7:106807400-106811400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr7:106807600-106811000	Active TSS	HMEC	breast
9	chr7:106807600-106811200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:106807600-106811200	Active TSS	HUES6 Cell Line	embryonic stem cell
11	chr7:106807600-106811200	Active TSS	Fetal Kidney	kidney
12	chr7:106807600-106811200	Active TSS	Skeletal Muscle Female	skeletal muscle
13	chr7:106807600-106811400	Active TSS	ES-I3 Cell Line	embryonic stem cell
14	chr7:106807600-106811400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr7:106807600-106811400	Active TSS	HUES48 Cell Line	embryonic stem cell
16	chr7:106807600-106811400	Active TSS	HUES64 Cell Line	embryonic stem cell
17	chr7:106807600-106811400	Active TSS	iPS-20b Cell Line	embryonic stem cell
18	chr7:106807600-106811400	Active TSS	Breast Myoepithelial Primary Cells	Breast
19	chr7:106807600-106811400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr7:106807600-106811400	Active TSS	NHDF-Ad	bronchial
21	chr7:106807600-106812000	Active TSS	K562	blood
22	chr7:106807800-106811000	Active TSS	iPS-15b Cell Line	embryonic stem cell
23	chr7:106807800-106811000	Active TSS	Brain Hippocampus Middle	brain
24	chr7:106807800-106811000	Active TSS	Fetal Muscle Trunk	muscle
25	chr7:106807800-106811200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr7:106807800-106811200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr7:106807800-106811200	Active TSS	Aorta	Aorta
28	chr7:106807800-106811200	Active TSS	Colon Smooth Muscle	Colon
29	chr7:106807800-106811200	Active TSS	Right Ventricle	heart
30	chr7:106807800-106811200	Active TSS	Thymus	Thymus
31	chr7:106807800-106811400	Active TSS	H1 Cell Line	embryonic stem cell
32	chr7:106807800-106811400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr7:106807800-106811400	Active TSS	Psoas Muscle	Psoas
34	chr7:106807800-106811400	Active TSS	GM12878-XiMat	blood
35	chr7:106807800-106811400	Active TSS	HSMMtube	muscle
36	chr7:106807800-106811800	Active TSS	Ovary	ovary
37	chr7:106808000-106811000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
38	chr7:106808000-106811000	Active TSS	H9 Cell Line	embryonic stem cell
39	chr7:106808000-106811000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr7:106808000-106811000	Active TSS	Colonic Mucosa	Colon
41	chr7:106808000-106811200	Active TSS	Brain Angular Gyrus	brain
42	chr7:106808000-106811400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
43	chr7:106808000-106811400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr7:106808000-106811400	Active TSS	Monocytes-CD14+_RO01746	blood
45	chr7:106808200-106811000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr7:106808200-106811200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr7:106808200-106811200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr7:106808400-106811400	Active TSS	Lung	lung
49	chr7:106808800-106811200	Active TSS	Duodenum Smooth Muscle	Duodenum
50	chr7:106809000-106811000	Active TSS	Placenta	Placenta

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