Variant report

Variant	rs6949961
Chromosome Location	chr7:106850755-106850756
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:106849228..106851031-chr7:106852339..106854731,2	MCF-7	breast:
2	chr7:106850452..106852711-chr7:106857094..106858643,3	K562	blood:
3	chr7:106828812..106831319-chr7:106849503..106851768,3	K562	blood:
4	chr7:106849189..106851803-chr7:106991183..106993127,2	K562	blood:
5	chr7:106838412..106842841-chr7:106847097..106851611,6	K562	blood:

Variant related genes	Relation type
ENSG00000105856	Chromatin interaction

Extended variants
information (count: 157 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:153)

rs_ID	r²[population]
rs1002935	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1018946	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1018947	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10253172	0.84[CEU][hapmap];0.91[AMR][1000 genomes]
rs10253291	0.84[CEU][hapmap];0.83[AMR][1000 genomes]
rs10487271	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10953529	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10953530	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10953531	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10953533	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10953534	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10953535	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10953537	0.94[ASN][1000 genomes]
rs1121312	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11761181	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11762152	0.85[ASN][1000 genomes]
rs11764448	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11766060	0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11767623	0.89[AMR][1000 genomes]
rs11769527	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11769861	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11769901	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11773514	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12154285	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12531187	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12532447	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12532849	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12532953	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12532967	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12533516	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12533767	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12534000	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12534676	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12535081	0.82[EUR][1000 genomes]
rs12535258	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs12535814	0.93[ASN][1000 genomes]
rs12536485	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12536491	0.96[ASN][1000 genomes]
rs12536574	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12536603	0.96[ASN][1000 genomes]
rs12537011	0.94[ASN][1000 genomes]
rs12537374	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12537730	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12537733	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12538090	0.81[EUR][1000 genomes]
rs12538769	0.82[EUR][1000 genomes]
rs12538848	0.82[EUR][1000 genomes]
rs12540475	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12705405	0.81[CEU][hapmap];0.89[AMR][1000 genomes]
rs1548523	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1548524	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17349904	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17350182	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17427123	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17427158	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17427849	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17428071	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17428126	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17428504	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17429118	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17429146	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1981696	0.84[CEU][hapmap];0.82[GIH][hapmap];0.93[MEX][hapmap];0.87[TSI][hapmap];0.89[AMR][1000 genomes]
rs1989814	0.93[ASN][1000 genomes]
rs2023892	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2107318	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2107319	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2189501	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2249043	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2299422	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2395859	0.94[ASN][1000 genomes]
rs257371	0.89[AMR][1000 genomes]
rs257372	0.89[AMR][1000 genomes]
rs257373	0.89[AMR][1000 genomes]
rs257375	0.89[GIH][hapmap];0.87[TSI][hapmap];0.89[AMR][1000 genomes]
rs257377	0.84[CEU][hapmap];0.96[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.89[TSI][hapmap];0.89[AMR][1000 genomes]
rs257378	0.84[CEU][hapmap];0.91[AMR][1000 genomes]
rs257379	0.83[AMR][1000 genomes]
rs257381	0.89[AMR][1000 genomes]
rs257382	0.89[AMR][1000 genomes]
rs257385	0.91[AMR][1000 genomes]
rs257386	0.91[AMR][1000 genomes]
rs257387	0.84[CEU][hapmap];0.96[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.92[TSI][hapmap];0.89[AMR][1000 genomes]
rs2894459	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3729876	0.84[CEU][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.91[AMR][1000 genomes]
rs3729877	0.84[CEU][hapmap];0.92[GIH][hapmap];0.93[MEX][hapmap];0.89[TSI][hapmap];0.89[AMR][1000 genomes]
rs3757713	0.93[ASN][1000 genomes]
rs3779498	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3779500	0.84[CEU][hapmap];0.89[GIH][hapmap];0.93[MEX][hapmap];0.89[TSI][hapmap];0.89[AMR][1000 genomes]
rs3801958	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3801959	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3801963	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3801965	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3815148	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3823959	0.94[ASN][1000 genomes]
rs3823960	0.94[ASN][1000 genomes]
rs4727670	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4727671	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4730222	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4730223	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.97[TSI][hapmap];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4730224	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4730226	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4730227	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4730228	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4730229	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4730231	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4730232	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4730233	0.82[EUR][1000 genomes]
rs57525841	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58319984	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58663672	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59900773	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60255281	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61014091	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs61406169	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61511581	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61673847	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6466160	0.84[CEU][hapmap];0.89[AMR][1000 genomes]
rs6466162	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6946036	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6946931	0.84[CEU][hapmap];0.96[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.92[TSI][hapmap];0.91[AMR][1000 genomes]
rs6947675	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6947857	0.84[CEU][hapmap];0.91[AMR][1000 genomes]
rs6951639	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6960148	0.84[CEU][hapmap];0.91[AMR][1000 genomes]
rs6960813	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6963917	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6964798	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6964966	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6965001	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6967638	0.85[EUR][1000 genomes]
rs6967639	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6967745	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6971675	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6971774	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6977868	0.81[CEU][hapmap];0.91[AMR][1000 genomes]
rs7777976	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7779062	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7781947	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7783181	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7783562	0.96[ASN][1000 genomes]
rs7789500	0.93[ASN][1000 genomes]
rs7789678	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7793594	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7794598	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap]
rs7794915	0.93[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7794965	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7798223	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7800443	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7803290	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7807648	0.83[EUR][1000 genomes]
rs7981	0.94[CEU][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9641378	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs997311	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831087	chr7:106673465-106872460	Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv3383027	chr7:106802625-107096474	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv888939	chr7:106849393-107045700	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
4	esv2756226	chr7:106850755-106944563	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs6949961	LHFPL3	cis	parietal	SCAN
rs6949961	ZNF284	trans	cerebellum	SCAN
rs6949961	GPR22	cis	multi-tissue	Pritchard
rs6949961	NRCAM	cis	parietal	SCAN
rs6949961	BCAP29	cis	parietal	SCAN
rs6949961	ATXN7L1	cis	parietal	SCAN
rs6949961	PRKAR2B	cis	brain	seeQTL

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:106817400-106851400	Strong transcription	Primary B cells from peripheral blood	blood
2	chr7:106819600-106851800	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr7:106819800-106851600	Strong transcription	Dnd41	blood
4	chr7:106820000-106851200	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr7:106820000-106851600	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr7:106820200-106851200	Strong transcription	Primary B cells from cord blood	blood
7	chr7:106820200-106851800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr7:106820200-106851800	Strong transcription	Fetal Thymus	thymus
9	chr7:106821000-106854600	Strong transcription	Primary T cells from cord blood	blood
10	chr7:106821200-106851800	Strong transcription	Primary T cells fromperipheralblood	blood
11	chr7:106821200-106851800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr7:106821200-106851800	Strong transcription	Rectal Mucosa Donor 29	rectum
13	chr7:106821400-106851800	Strong transcription	Duodenum Mucosa	Duodenum
14	chr7:106821600-106851600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr7:106821600-106851800	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr7:106821800-106851400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr7:106823000-106851200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr7:106828600-106851800	Strong transcription	Fetal Intestine Large	intestine
19	chr7:106828800-106851200	Strong transcription	Primary T helper cells PMA-I stimulated	--
20	chr7:106832000-106852400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr7:106834200-106851600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr7:106834800-106851000	Strong transcription	Thymus	Thymus
23	chr7:106835200-106851800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
24	chr7:106835400-106852200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr7:106835800-106851000	Strong transcription	Primary T helper naive cells from peripheral blood	blood
26	chr7:106835800-106851600	Strong transcription	Fetal Muscle Leg	muscle
27	chr7:106836200-106852000	Strong transcription	Fetal Muscle Trunk	muscle
28	chr7:106836400-106851200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr7:106837000-106851000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr7:106838200-106865200	Weak transcription	Stomach Mucosa	stomach
31	chr7:106840000-106853400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr7:106841200-106853000	Weak transcription	Small Intestine	intestine
33	chr7:106841600-106855000	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr7:106841800-106851000	Strong transcription	HepG2	liver
35	chr7:106842600-106852000	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr7:106844000-106870400	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr7:106844200-106873200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr7:106844600-106851400	Weak transcription	HUVEC	blood vessel
39	chr7:106844600-106853800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
40	chr7:106844600-106873600	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr7:106844600-106880400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr7:106844600-106888400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr7:106844800-106852000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr7:106845000-106851800	Strong transcription	Fetal Stomach	stomach
45	chr7:106845600-106851200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr7:106846000-106925800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr7:106846200-106870600	Weak transcription	NH-A	brain
48	chr7:106846400-106853400	Weak transcription	Brain Germinal Matrix	brain
49	chr7:106846400-106862400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr7:106847000-106851000	Weak transcription	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links