Variant report

Variant	rs1372045
Chromosome Location	chr11:76563014-76563015
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76563009..76565610-chr11:76571444..76574710,3	K562	blood:
2	chr11:76562890..76566104-chr11:76570759..76573075,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000078124	Chromatin interaction

Extended variants
information (count: 152 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:152)

rs_ID	r²[population]
rs10431181	0.88[CEU][hapmap]
rs10736812	0.88[CEU][hapmap]
rs10751264	0.88[CEU][hapmap]
rs10751267	0.87[CEU][hapmap]
rs10751268	0.82[CEU][hapmap]
rs10793201	0.84[EUR][1000 genomes]
rs10793212	0.88[CEU][hapmap]
rs10793213	0.88[CEU][hapmap]
rs10793214	0.88[CEU][hapmap]
rs10793215	0.88[CEU][hapmap]
rs10793217	0.88[CEU][hapmap]
rs10793220	0.88[CEU][hapmap];0.89[GIH][hapmap]
rs10793223	0.82[CEU][hapmap]
rs10793227	0.88[CEU][hapmap]
rs10793229	0.88[CEU][hapmap]
rs10793230	0.88[CEU][hapmap]
rs10793231	0.88[CEU][hapmap]
rs10793232	0.88[CEU][hapmap]
rs10899294	0.84[EUR][1000 genomes]
rs10899295	0.84[EUR][1000 genomes]
rs10899298	0.80[EUR][1000 genomes]
rs10899307	0.88[CEU][hapmap]
rs10899310	0.88[CEU][hapmap];0.87[GIH][hapmap]
rs10899311	0.87[CEU][hapmap]
rs10899312	0.87[CEU][hapmap]
rs10899313	0.88[CEU][hapmap]
rs10899315	0.88[CEU][hapmap]
rs10899328	0.87[CEU][hapmap]
rs10899329	0.87[CEU][hapmap]
rs10899340	0.88[CEU][hapmap]
rs10899341	0.88[CEU][hapmap]
rs11236977	0.84[EUR][1000 genomes]
rs11237027	0.88[CEU][hapmap]
rs12223659	0.88[CEU][hapmap]
rs1225129	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1225131	0.87[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1225132	0.88[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.90[MKK][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1225133	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1225134	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1225135	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1225136	0.87[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1225137	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1225139	0.88[CEU][hapmap];0.82[CHB][hapmap];0.85[CHD][hapmap];0.84[TSI][hapmap]
rs1225140	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.93[MKK][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1225141	0.87[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1225144	0.91[ASN][1000 genomes]
rs1225147	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12291376	0.88[ASN][1000 genomes]
rs12292156	0.88[CEU][hapmap]
rs1235157	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.90[MKK][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12718490	0.88[CEU][hapmap];0.89[GIH][hapmap]
rs12794575	0.94[CEU][hapmap];0.84[EUR][1000 genomes]
rs12796913	0.88[CEU][hapmap];0.87[GIH][hapmap]
rs1356455	0.88[CEU][hapmap];0.89[GIH][hapmap]
rs1372046	0.94[CEU][hapmap];0.84[EUR][1000 genomes]
rs1474087	0.88[CEU][hapmap];0.87[GIH][hapmap]
rs1517905	0.88[CEU][hapmap]
rs1517906	0.88[CEU][hapmap]
rs1517907	0.94[CEU][hapmap]
rs1517909	0.88[CEU][hapmap]
rs1589126	0.88[CEU][hapmap]
rs1660579	0.88[CEU][hapmap];0.84[TSI][hapmap]
rs1914599	0.87[CEU][hapmap]
rs1914600	0.88[CEU][hapmap]
rs1945083	0.88[CEU][hapmap]
rs1980204	0.88[CEU][hapmap]
rs1980205	0.87[CEU][hapmap]
rs2119455	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2119456	0.88[CEU][hapmap]
rs2119457	0.88[CEU][hapmap];0.89[GIH][hapmap]
rs2156770	0.87[CEU][hapmap]
rs2203755	0.88[CEU][hapmap]
rs2372386	0.80[EUR][1000 genomes]
rs2372388	0.88[CEU][hapmap]
rs2826	0.88[CEU][hapmap]
rs3740765	0.88[CEU][hapmap]
rs3740767	0.88[CEU][hapmap]
rs3781697	0.88[CEU][hapmap]
rs3824889	0.88[CEU][hapmap]
rs4145048	0.88[CEU][hapmap]
rs4379869	0.88[CEU][hapmap];0.89[GIH][hapmap]
rs4457775	0.94[CEU][hapmap]
rs4460836	0.88[CEU][hapmap]
rs4471450	0.88[CEU][hapmap];0.89[GIH][hapmap]
rs4488228	0.88[CEU][hapmap];0.89[GIH][hapmap]
rs4488229	0.87[CEU][hapmap]
rs4944128	0.86[CEU][hapmap]
rs4944132	0.87[CEU][hapmap]
rs4944134	0.88[CEU][hapmap]
rs4945115	0.88[CEU][hapmap]
rs4945116	0.88[CEU][hapmap]
rs4945124	0.88[CEU][hapmap]
rs4945129	0.88[CEU][hapmap]
rs4945132	0.91[CEU][hapmap]
rs6592671	1.00[CEU][hapmap];0.92[GIH][hapmap];0.86[TSI][hapmap];0.95[EUR][1000 genomes]
rs6592672	0.90[EUR][1000 genomes]
rs6592675	0.85[EUR][1000 genomes]
rs6592676	0.88[CEU][hapmap];0.80[EUR][1000 genomes]
rs6592677	0.80[EUR][1000 genomes]
rs6592680	0.88[CEU][hapmap];0.89[GIH][hapmap]
rs6592682	0.88[CEU][hapmap]
rs6592683	0.88[CEU][hapmap]
rs6592684	0.88[CEU][hapmap]
rs6592687	0.88[CEU][hapmap]
rs6592691	0.88[CEU][hapmap]
rs7101593	0.87[CEU][hapmap]
rs7103308	0.87[CEU][hapmap]
rs7103500	0.87[CEU][hapmap]
rs7105895	0.85[EUR][1000 genomes]
rs7106625	0.88[CEU][hapmap];0.89[GIH][hapmap];0.80[EUR][1000 genomes]
rs7110532	0.88[CEU][hapmap]
rs7113282	0.88[CEU][hapmap];0.89[GIH][hapmap]
rs7113290	0.94[CEU][hapmap];0.89[GIH][hapmap];0.84[EUR][1000 genomes]
rs7114827	0.88[CEU][hapmap]
rs7116513	0.80[EUR][1000 genomes]
rs7116800	0.87[CEU][hapmap]
rs7116872	0.84[EUR][1000 genomes]
rs7117545	0.88[CEU][hapmap];0.89[GIH][hapmap]
rs7117682	0.88[CEU][hapmap];0.89[GIH][hapmap]
rs7118762	0.88[CEU][hapmap];0.89[GIH][hapmap]
rs7119361	0.88[CEU][hapmap];0.89[GIH][hapmap];0.80[EUR][1000 genomes]
rs7120215	0.87[CEU][hapmap]
rs7121273	0.88[CEU][hapmap]
rs7123496	0.88[CEU][hapmap]
rs7123694	0.85[CEU][hapmap]
rs7123723	0.88[CEU][hapmap]
rs7127936	0.88[CEU][hapmap]
rs7924613	0.93[CEU][hapmap]
rs7924888	0.85[EUR][1000 genomes]
rs7925135	0.94[CEU][hapmap]
rs7925652	0.88[CEU][hapmap]
rs7925774	0.88[CEU][hapmap]
rs7927367	0.93[CEU][hapmap]
rs7927658	0.88[CEU][hapmap];0.89[GIH][hapmap]
rs7927731	0.88[CEU][hapmap]
rs7931561	0.94[CEU][hapmap];0.89[GIH][hapmap];0.85[EUR][1000 genomes]
rs7931646	0.88[CEU][hapmap]
rs7931869	0.88[CEU][hapmap]
rs7932288	0.94[CEU][hapmap];0.89[GIH][hapmap];0.85[EUR][1000 genomes]
rs7933351	0.88[CEU][hapmap];0.80[EUR][1000 genomes]
rs7937883	0.88[CEU][hapmap];0.86[GIH][hapmap]
rs7940782	0.88[CEU][hapmap]
rs7942574	0.88[CEU][hapmap];0.89[GIH][hapmap]
rs7943913	0.88[CEU][hapmap]
rs7951501	0.88[CEU][hapmap]
rs894065	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs920512	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9326485	0.88[CEU][hapmap]
rs938810	0.88[CEU][hapmap];0.89[GIH][hapmap]
rs949339	0.88[CEU][hapmap]
rs949340	0.88[CEU][hapmap]
rs963704	0.88[CEU][hapmap]

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs1372045	ACER3	cis	parietal	SCAN
rs1372045	CAPN5	cis	parietal	SCAN
rs1372045	NEU3	cis	parietal	SCAN
rs1372045	LIPT2	cis	parietal	SCAN
rs1372045	ACER3	cis	cerebellum	SCAN
rs1372045	ACER3	cis	lymphoblastoid	seeQTL

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76549600-76570800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:76549800-76572000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:76550600-76566400	Weak transcription	Lung	lung
4	chr11:76562000-76565400	Weak transcription	K562	blood
5	chr11:76562000-76567200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:76562000-76571200	Weak transcription	Adipose Nuclei	Adipose
7	chr11:76562000-76571400	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr11:76562200-76565600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:76562200-76570600	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr11:76562200-76571000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr11:76562400-76569800	Weak transcription	Placenta	Placenta
12	chr11:76562600-76564000	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr11:76562600-76567400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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