Variant report

Variant	rs2700486
Chromosome Location	chr12:51108536-51108537
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:51094127..51096407-chr12:51107312..51109683,2	K562	blood:

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10506296	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10735827	0.85[ASN][1000 genomes]
rs10747592	0.85[ASN][1000 genomes]
rs10747593	0.80[ASN][1000 genomes]
rs10783368	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10783388	0.85[ASN][1000 genomes]
rs10876048	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10876054	0.90[EUR][1000 genomes]
rs10876057	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10876082	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10876083	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10876085	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10876088	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10876091	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11169551	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11169553	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11169556	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12099615	0.86[EUR][1000 genomes]
rs12296379	0.86[EUR][1000 genomes]
rs12320201	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13328926	0.86[EUR][1000 genomes]
rs1402693	0.86[EUR][1000 genomes]
rs1521515	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1521517	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1561422	0.85[ASN][1000 genomes]
rs17124888	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17124907	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1815010	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1996750	0.86[EUR][1000 genomes]
rs2246840	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2252595	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2684886	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2684890	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2684891	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2684902	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2684906	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28414775	0.86[EUR][1000 genomes]
rs28479152	0.86[EUR][1000 genomes]
rs2947617	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3803181	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3825401	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4129355	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4143663	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4306347	0.86[EUR][1000 genomes]
rs4517607	0.86[EUR][1000 genomes]
rs4768887	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4768909	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4768915	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4768920	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56753963	0.86[EUR][1000 genomes]
rs56818625	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57328764	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57512759	0.86[EUR][1000 genomes]
rs58301497	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58943330	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59194948	0.86[EUR][1000 genomes]
rs59284993	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59683461	0.86[EUR][1000 genomes]
rs60239257	0.86[EUR][1000 genomes]
rs60494920	0.86[EUR][1000 genomes]
rs60908906	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61926300	0.84[ASN][1000 genomes]
rs6580766	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6580767	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6580768	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6580770	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7131993	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7132443	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7135222	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7301125	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7302749	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7303202	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7304793	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7306387	0.86[EUR][1000 genomes]
rs7308872	0.99[ASN][1000 genomes]
rs7310507	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7487150	0.82[ASN][1000 genomes]
rs7487645	0.86[EUR][1000 genomes]
rs7953880	0.86[EUR][1000 genomes]
rs7955310	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7959129	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7964642	0.83[ASN][1000 genomes]
rs7969251	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7978443	0.86[EUR][1000 genomes]
rs7979184	0.81[EUR][1000 genomes]
rs7979474	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs829125	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs865490	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs939631	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs951591	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9634264	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9804759	0.82[EUR][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:51049200-51108600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr12:51063200-51138600	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr12:51063600-51138800	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr12:51063600-51145400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr12:51064000-51109800	Strong transcription	Primary B cells from peripheral blood	blood
6	chr12:51064000-51127400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr12:51067400-51120600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr12:51067400-51143600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr12:51067600-51142200	Strong transcription	Primary T helper cells fromperipheralblood	blood
10	chr12:51068200-51141200	Strong transcription	Placenta	Placenta
11	chr12:51068200-51144000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr12:51074600-51109800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr12:51074600-51139600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr12:51079200-51120600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr12:51080200-51145400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr12:51083400-51126000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr12:51085600-51118400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr12:51086200-51109800	Strong transcription	Fetal Muscle Trunk	muscle
19	chr12:51086200-51140800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr12:51086200-51142600	Strong transcription	Primary T helper cells PMA-I stimulated	--
21	chr12:51086400-51113400	Strong transcription	Cortex derived primary cultured neurospheres	brain
22	chr12:51090400-51145400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr12:51090600-51138400	Strong transcription	Primary neutrophils fromperipheralblood	blood
24	chr12:51093600-51128600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr12:51096000-51142000	Strong transcription	Fetal Muscle Leg	muscle
26	chr12:51096200-51144600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr12:51096600-51110200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr12:51096600-51111000	Strong transcription	Rectal Mucosa Donor 29	rectum
29	chr12:51096800-51109600	Strong transcription	HepG2	liver
30	chr12:51096800-51113400	Strong transcription	Duodenum Mucosa	Duodenum
31	chr12:51097000-51110000	Strong transcription	Primary hematopoietic stem cells	blood
32	chr12:51097000-51110000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr12:51097200-51109800	Strong transcription	HUES64 Cell Line	embryonic stem cell
34	chr12:51097400-51109200	Strong transcription	NH-A	brain
35	chr12:51098800-51128200	Strong transcription	Brain Germinal Matrix	brain
36	chr12:51099000-51109200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr12:51099400-51112000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr12:51099600-51112200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr12:51099600-51117400	Weak transcription	Psoas Muscle	Psoas
40	chr12:51100000-51112200	Weak transcription	Fetal Brain Male	brain
41	chr12:51101000-51144800	Strong transcription	Fetal Stomach	stomach
42	chr12:51101200-51114000	Strong transcription	Fetal Intestine Small	intestine
43	chr12:51102000-51116800	Weak transcription	Small Intestine	intestine
44	chr12:51102600-51115000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr12:51102800-51108600	Weak transcription	HUVEC	blood vessel
46	chr12:51102800-51109000	Weak transcription	Fetal Kidney	kidney
47	chr12:51102800-51112400	Weak transcription	Aorta	Aorta
48	chr12:51102800-51115200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr12:51103000-51112000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr12:51103000-51112400	Weak transcription	Muscle Satellite Cultured Cells	--

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