Variant report

Variant	rs73745084
Chromosome Location	chr6:35024881-35024882
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35020203..35022159-chr6:35023011..35024992,4	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs55654367	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55867804	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55941554	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56122629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60414437	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60528357	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61076662	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61250266	1.00[AMR][1000 genomes]
rs6902267	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6933596	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6936907	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6940626	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745079	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745085	1.00[AMR][1000 genomes]
rs73745128	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745130	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745132	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745133	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745141	0.83[AFR][1000 genomes]
rs73745145	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745153	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745159	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745160	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748034	1.00[AMR][1000 genomes]
rs73748043	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748047	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748049	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748057	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748062	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748063	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748065	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748069	1.00[AMR][1000 genomes]
rs73748070	1.00[AMR][1000 genomes]
rs73748071	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34994600-35036000	Weak transcription	K562	blood
2	chr6:35015800-35044200	Weak transcription	HMEC	breast
3	chr6:35016200-35055000	Weak transcription	Hela-S3	cervix
4	chr6:35016800-35026400	Weak transcription	Primary B cells from peripheral blood	blood
5	chr6:35016800-35026800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr6:35016800-35027800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr6:35016800-35028000	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr6:35016800-35028000	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr6:35017000-35026000	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr6:35017000-35026200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr6:35017000-35026200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr6:35017400-35028000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr6:35017400-35028600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr6:35017600-35028000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr6:35017600-35036200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr6:35017800-35027600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr6:35017800-35053000	Weak transcription	Small Intestine	intestine
18	chr6:35018200-35025400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr6:35018200-35025600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr6:35018400-35052800	Weak transcription	Fetal Kidney	kidney
21	chr6:35018600-35025000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr6:35018600-35027800	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr6:35018600-35051000	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr6:35018800-35026600	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr6:35018800-35029000	Weak transcription	NHDF-Ad	bronchial
26	chr6:35018800-35038200	Strong transcription	Duodenum Mucosa	Duodenum
27	chr6:35018800-35060600	Strong transcription	Primary neutrophils fromperipheralblood	blood
28	chr6:35019400-35027600	Weak transcription	Dnd41	blood
29	chr6:35020000-35025200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr6:35020000-35059800	Strong transcription	Fetal Intestine Small	intestine
31	chr6:35020200-35037600	Strong transcription	Fetal Intestine Large	intestine
32	chr6:35020400-35059400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr6:35020600-35034800	Strong transcription	Primary T cells from cord blood	blood
34	chr6:35020800-35025000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr6:35021000-35037000	Strong transcription	Primary monocytes fromperipheralblood	blood
36	chr6:35021000-35037600	Strong transcription	Monocytes-CD14+_RO01746	blood
37	chr6:35021200-35025400	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr6:35021200-35025800	Weak transcription	Fetal Brain Female	brain
39	chr6:35021200-35026800	Weak transcription	Psoas Muscle	Psoas
40	chr6:35021200-35027400	Genic enhancers	Stomach Smooth Muscle	stomach
41	chr6:35021200-35028000	Weak transcription	NHLF	lung
42	chr6:35021200-35028600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr6:35021200-35034800	Strong transcription	Rectal Mucosa Donor 29	rectum
44	chr6:35021400-35025600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr6:35021400-35025600	Strong transcription	Fetal Lung	lung
46	chr6:35021400-35036200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr6:35021400-35037400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr6:35021600-35025200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr6:35021600-35025200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr6:35021600-35025400	Weak transcription	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links