Variant report

Variant	rs73748065
Chromosome Location	chr6:35170888-35170889
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:35131417..35136766-chr6:35169545..35174762,6	MCF-7	breast:
2	chr6:35169302..35171245-chr6:35179554..35182344,2	K562	blood:
3	chr6:35168653..35170985-chr6:35173621..35175811,2	MCF-7	breast:
4	chr6:35147410..35151273-chr6:35169982..35172318,3	MCF-7	breast:
5	chr6:35152047..35154652-chr6:35168732..35171108,2	MCF-7	breast:
6	chr6:35165622..35167133-chr6:35170794..35173161,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SCUBE3-1	chr6:35170798-35171095	NONHSAT112165

No data

Variant related genes	Relation type
ENSG00000146197	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs55654367	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55867804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55941554	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56122629	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57977624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57996659	0.83[AFR][1000 genomes]
rs60414437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60528357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61076662	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61250266	1.00[AMR][1000 genomes]
rs6902267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6933596	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6936907	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6940626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745079	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745084	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745085	1.00[AMR][1000 genomes]
rs73745128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745132	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745133	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745141	1.00[AFR][1000 genomes]
rs73745145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745153	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745159	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745179	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745182	1.00[AMR][1000 genomes]
rs73745184	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745186	1.00[AMR][1000 genomes]
rs73745194	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748034	1.00[AMR][1000 genomes]
rs73748043	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748047	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748049	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748057	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748069	1.00[AMR][1000 genomes]
rs73748070	1.00[AMR][1000 genomes]
rs73748071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3428128	chr6:35150524-35225843	Bivalent Enhancer Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2758047	chr6:35168116-35291002	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	esv2759419	chr6:35168116-35291002	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35163200-35171200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:35163600-35171000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:35165200-35171200	Weak transcription	NH-A	brain
4	chr6:35167600-35171600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:35168000-35171200	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr6:35168200-35176200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:35169200-35171400	Enhancers	Fetal Heart	heart
8	chr6:35169400-35171800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr6:35169400-35171800	Enhancers	Right Ventricle	heart
10	chr6:35169400-35172800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:35169600-35172600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr6:35169600-35174200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:35169600-35174600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:35169800-35171000	Bivalent Enhancer	HepG2	liver
15	chr6:35169800-35171200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:35169800-35171800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:35169800-35171800	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr6:35169800-35171800	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr6:35169800-35171800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr6:35169800-35171800	Enhancers	Brain Substantia Nigra	brain
21	chr6:35169800-35171800	Enhancers	Right Atrium	heart
22	chr6:35169800-35173000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr6:35169800-35175000	Enhancers	Osteobl	bone
24	chr6:35170000-35171800	Enhancers	Brain Angular Gyrus	brain
25	chr6:35170000-35171800	Enhancers	Brain Anterior Caudate	brain
26	chr6:35170000-35171800	Enhancers	Brain Cingulate Gyrus	brain
27	chr6:35170000-35171800	Enhancers	Brain Hippocampus Middle	brain
28	chr6:35170200-35171000	Bivalent Enhancer	Fetal Stomach	stomach
29	chr6:35170200-35171800	Enhancers	Liver	Liver
30	chr6:35170200-35174600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr6:35170400-35171000	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr6:35170400-35171600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr6:35170600-35171000	Weak transcription	Left Ventricle	heart
34	chr6:35170800-35171000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr6:35170800-35172800	Enhancers	NHDF-Ad	bronchial

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