Variant report

Variant	rs60414437
Chromosome Location	chr6:35178359-35178360
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35177824..35181731-chr6:35185438..35190079,5	K562	blood:
2	chr6:35149389..35151264-chr6:35177090..35178879,2	MCF-7	breast:
3	chr6:35112797..35115026-chr6:35176369..35178563,2	MCF-7	breast:
4	chr6:35158359..35161056-chr6:35178147..35180648,2	MCF-7	breast:
5	chr6:35177739..35179497-chr6:35194897..35197344,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs55654367	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55867804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55941554	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56122629	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57977624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57996659	0.83[AFR][1000 genomes]
rs60528357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61076662	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61250266	1.00[AMR][1000 genomes]
rs6902267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6933596	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6936907	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6940626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745079	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745084	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745085	1.00[AMR][1000 genomes]
rs73745128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745132	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745133	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745141	1.00[AFR][1000 genomes]
rs73745145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745153	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745159	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745179	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745182	1.00[AMR][1000 genomes]
rs73745184	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745186	1.00[AMR][1000 genomes]
rs73745194	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748034	1.00[AMR][1000 genomes]
rs73748043	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748047	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748049	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748057	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748069	1.00[AMR][1000 genomes]
rs73748070	1.00[AMR][1000 genomes]
rs73748071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3428128	chr6:35150524-35225843	Bivalent Enhancer Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2758047	chr6:35168116-35291002	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	esv2759419	chr6:35168116-35291002	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35174600-35180600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:35176600-35180600	Weak transcription	Osteobl	bone
3	chr6:35177000-35180400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:35178000-35180800	Weak transcription	Fetal Heart	heart

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