Variant report

Variant	rs73745128
Chromosome Location	chr6:35199478-35199479
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:35182418..35185303-chr6:35197191..35199627,2	MCF-7	breast:
2	chr6:35178562..35181407-chr6:35198838..35201388,2	MCF-7	breast:
3	chr6:35195991..35200691-chr6:35207151..35212650,5	K562	blood:
4	chr6:35182919..35187135-chr6:35197439..35201271,4	K562	blood:
5	chr6:35195154..35200305-chr6:35202213..35207133,5	K562	blood:
6	chr6:35189954..35192837-chr6:35197811..35199507,2	K562	blood:
7	chr6:35191178..35195234-chr6:35198102..35200512,4	K562	blood:
8	chr6:35196748..35200110-chr6:35208798..35212197,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000272374	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs55654367	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55867804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55941554	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56122629	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57977624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57996659	0.83[AFR][1000 genomes]
rs60414437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60528357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61076662	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61250266	1.00[AMR][1000 genomes]
rs6902267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6933596	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6936907	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6940626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745079	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745084	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745085	1.00[AMR][1000 genomes]
rs73745130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745132	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745133	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745141	1.00[AFR][1000 genomes]
rs73745145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745153	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745159	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745179	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745182	1.00[AMR][1000 genomes]
rs73745184	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745186	1.00[AMR][1000 genomes]
rs73745194	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748034	1.00[AMR][1000 genomes]
rs73748043	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748047	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748049	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748057	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748069	1.00[AMR][1000 genomes]
rs73748070	1.00[AMR][1000 genomes]
rs73748071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3428128	chr6:35150524-35225843	Bivalent Enhancer Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2758047	chr6:35168116-35291002	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	esv2759419	chr6:35168116-35291002	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35182400-35209000	Weak transcription	A549	lung
2	chr6:35184800-35205600	Weak transcription	Fetal Brain Female	brain
3	chr6:35186200-35202800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:35186400-35212000	Weak transcription	NHDF-Ad	bronchial
5	chr6:35186600-35204600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr6:35186600-35205400	Weak transcription	Fetal Muscle Trunk	muscle
7	chr6:35186800-35212000	Weak transcription	Dnd41	blood
8	chr6:35188200-35200400	Genic enhancers	Osteobl	bone
9	chr6:35188200-35205800	Weak transcription	Fetal Kidney	kidney
10	chr6:35188200-35206400	Weak transcription	NH-A	brain
11	chr6:35188400-35199600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:35189200-35200000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:35189600-35205800	Weak transcription	Brain Germinal Matrix	brain
14	chr6:35190000-35205600	Weak transcription	Fetal Muscle Leg	muscle
15	chr6:35190200-35212000	Weak transcription	Brain Angular Gyrus	brain
16	chr6:35190600-35201800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr6:35191200-35212000	Weak transcription	Primary T cells from cord blood	blood
18	chr6:35191400-35226000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:35192200-35211400	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr6:35194000-35201400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr6:35194000-35209400	Weak transcription	Thymus	Thymus
22	chr6:35194000-35225600	Weak transcription	Primary B cells from cord blood	blood
23	chr6:35194200-35202600	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr6:35194800-35202800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:35195600-35210600	Weak transcription	Spleen	Spleen
26	chr6:35195800-35202400	Weak transcription	Fetal Intestine Small	intestine
27	chr6:35197000-35205600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr6:35197200-35201000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr6:35197400-35201400	Enhancers	Fetal Heart	heart
30	chr6:35197600-35199600	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr6:35197600-35200000	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr6:35197600-35200800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr6:35197800-35199800	Enhancers	Right Atrium	heart
34	chr6:35197800-35200200	Enhancers	Left Ventricle	heart
35	chr6:35198000-35199600	Enhancers	Rectal Smooth Muscle	rectum
36	chr6:35198000-35199600	Enhancers	Right Ventricle	heart
37	chr6:35198000-35199800	Enhancers	Colon Smooth Muscle	Colon
38	chr6:35198000-35199800	Enhancers	Duodenum Smooth Muscle	Duodenum
39	chr6:35198200-35199800	Enhancers	Liver	Liver
40	chr6:35198400-35199600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr6:35198400-35199600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
42	chr6:35198400-35199600	Genic enhancers	Fetal Stomach	stomach
43	chr6:35198400-35199600	Enhancers	Skeletal Muscle Male	skeletal muscle
44	chr6:35198400-35199800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr6:35198400-35199800	Enhancers	Lung	lung
46	chr6:35198400-35200000	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr6:35198400-35202000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr6:35198600-35199600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr6:35198600-35199600	Enhancers	Gastric	stomach
50	chr6:35198600-35199800	Genic enhancers	Aorta	Aorta

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