Variant report

Variant	rs73745145
Chromosome Location	chr6:35232274-35232275
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35232162..35233752-chr6:35239050..35241956,2	K562	blood:
2	chr6:35231213..35234012-chr6:35440944..35442482,2	K562	blood:
3	chr6:35231872..35233836-chr6:35244161..35246644,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs55654367	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55867804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55941554	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56122629	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57977624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57996659	0.83[AFR][1000 genomes]
rs60414437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60528357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61076662	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61250266	1.00[AMR][1000 genomes]
rs6902267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6933596	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6936907	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6940626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745079	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745084	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745085	1.00[AMR][1000 genomes]
rs73745128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745132	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745133	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745141	1.00[AFR][1000 genomes]
rs73745153	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745159	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745179	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745182	1.00[AMR][1000 genomes]
rs73745184	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745186	1.00[AMR][1000 genomes]
rs73745194	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748034	1.00[AMR][1000 genomes]
rs73748043	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748047	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748049	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748057	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748069	1.00[AMR][1000 genomes]
rs73748070	1.00[AMR][1000 genomes]
rs73748071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758047	chr6:35168116-35291002	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	esv2759419	chr6:35168116-35291002	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35228200-35234400	Weak transcription	Lung	lung
2	chr6:35228200-35235000	Weak transcription	Ovary	ovary
3	chr6:35228200-35243000	Weak transcription	Aorta	Aorta
4	chr6:35228400-35236000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:35228400-35247800	Weak transcription	Fetal Muscle Trunk	muscle
6	chr6:35228400-35248000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:35228400-35250200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:35228600-35232400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:35228600-35232400	Weak transcription	Fetal Muscle Leg	muscle
10	chr6:35228600-35232800	Weak transcription	Primary B cells from cord blood	blood
11	chr6:35228600-35232800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr6:35228600-35235000	Weak transcription	Fetal Thymus	thymus
13	chr6:35228600-35237400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr6:35228600-35238000	Weak transcription	Fetal Stomach	stomach
15	chr6:35228600-35242000	Weak transcription	HSMMtube	muscle
16	chr6:35228600-35243000	Weak transcription	HSMM	muscle
17	chr6:35228600-35243000	Weak transcription	NH-A	brain
18	chr6:35228600-35248400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr6:35228600-35248800	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr6:35228600-35253200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr6:35228800-35232400	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr6:35228800-35234800	Weak transcription	HUVEC	blood vessel
23	chr6:35228800-35238800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:35228800-35242400	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr6:35228800-35242400	Weak transcription	NHEK	skin
26	chr6:35228800-35243200	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr6:35228800-35244000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr6:35228800-35248800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr6:35228800-35248800	Weak transcription	Spleen	Spleen
30	chr6:35228800-35249000	Weak transcription	Fetal Intestine Large	intestine
31	chr6:35228800-35249000	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr6:35228800-35251400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr6:35229000-35232400	Weak transcription	Small Intestine	intestine
34	chr6:35229000-35233400	Weak transcription	Gastric	stomach
35	chr6:35229000-35235000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr6:35229000-35237600	Weak transcription	Fetal Intestine Small	intestine
37	chr6:35229000-35241800	Weak transcription	Brain Cingulate Gyrus	brain
38	chr6:35229000-35242000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr6:35229000-35242400	Weak transcription	Stomach Smooth Muscle	stomach
40	chr6:35229000-35243000	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr6:35229000-35248800	Weak transcription	Duodenum Mucosa	Duodenum
42	chr6:35229000-35248800	Weak transcription	Thymus	Thymus
43	chr6:35229000-35249000	Weak transcription	Liver	Liver
44	chr6:35229000-35250400	Weak transcription	Fetal Brain Male	brain
45	chr6:35229200-35235000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr6:35229200-35238200	Weak transcription	Primary T cells from cord blood	blood
47	chr6:35229200-35243000	Weak transcription	Adipose Nuclei	Adipose
48	chr6:35229200-35246200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr6:35229200-35248800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr6:35229200-35248800	Weak transcription	Dnd41	blood

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