Variant report

Variant	rs73745186
Chromosome Location	chr6:35271314-35271315
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35270811..35278072-chr6:35434777..35439344,8	MCF-7	breast:
2	chr6:35271031..35272871-chr6:35275092..35276904,2	K562	blood:
3	chr6:35265465..35267988-chr6:35269395..35275247,5	MCF-7	breast:
4	chr6:35270724..35273111-chr6:35465041..35467348,2	K562	blood:
5	chr6:35265803..35267846-chr6:35270343..35273998,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198755	Chromatin interaction
ENSG00000023892	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs55654367	1.00[AMR][1000 genomes]
rs55867804	1.00[AMR][1000 genomes]
rs55941554	1.00[AMR][1000 genomes]
rs57977624	1.00[AMR][1000 genomes]
rs60414437	1.00[AMR][1000 genomes]
rs60528357	1.00[AMR][1000 genomes]
rs61076662	1.00[AMR][1000 genomes]
rs61250266	1.00[AMR][1000 genomes]
rs6902267	1.00[AMR][1000 genomes]
rs6933596	1.00[AMR][1000 genomes]
rs6936907	1.00[AMR][1000 genomes]
rs6940626	1.00[AMR][1000 genomes]
rs73745128	1.00[AMR][1000 genomes]
rs73745130	1.00[AMR][1000 genomes]
rs73745132	1.00[AMR][1000 genomes]
rs73745133	1.00[AMR][1000 genomes]
rs73745145	1.00[AMR][1000 genomes]
rs73745153	1.00[AMR][1000 genomes]
rs73745159	1.00[AMR][1000 genomes]
rs73745160	1.00[AMR][1000 genomes]
rs73745177	1.00[AMR][1000 genomes]
rs73745179	1.00[AMR][1000 genomes]
rs73745181	1.00[AMR][1000 genomes]
rs73745182	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745184	1.00[AMR][1000 genomes]
rs73745194	1.00[AMR][1000 genomes]
rs73748034	1.00[AMR][1000 genomes]
rs73748043	1.00[AMR][1000 genomes]
rs73748047	1.00[AMR][1000 genomes]
rs73748049	1.00[AMR][1000 genomes]
rs73748057	1.00[AMR][1000 genomes]
rs73748062	1.00[AMR][1000 genomes]
rs73748063	1.00[AMR][1000 genomes]
rs73748065	1.00[AMR][1000 genomes]
rs73748069	1.00[AMR][1000 genomes]
rs73748070	1.00[AMR][1000 genomes]
rs73748071	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758047	chr6:35168116-35291002	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	esv2759419	chr6:35168116-35291002	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35265200-35285600	Weak transcription	Brain Substantia Nigra	brain
2	chr6:35265400-35272200	Weak transcription	Fetal Brain Female	brain
3	chr6:35266000-35272000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:35266600-35272000	Weak transcription	Gastric	stomach
5	chr6:35266600-35279800	Weak transcription	Fetal Stomach	stomach
6	chr6:35266800-35277400	Weak transcription	Pancreas	Pancrea
7	chr6:35267400-35272400	Enhancers	Small Intestine	intestine
8	chr6:35268600-35278600	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr6:35269000-35272400	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr6:35269200-35273200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:35269800-35271400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
12	chr6:35269800-35272200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
13	chr6:35270000-35271400	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells short term culture	blood
14	chr6:35270000-35271400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
15	chr6:35270000-35271600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
16	chr6:35270000-35271600	Enhancers	Fetal Intestine Small	intestine
17	chr6:35270000-35272200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
18	chr6:35270000-35272200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
19	chr6:35270200-35271400	Flanking Active TSS	Primary B cells from cord blood	blood
20	chr6:35270200-35271400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr6:35270200-35271400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
22	chr6:35270200-35271400	Flanking Active TSS	Thymus	Thymus
23	chr6:35270200-35271400	Enhancers	HepG2	liver
24	chr6:35270200-35271400	Flanking Active TSS	NHEK	skin
25	chr6:35270200-35271600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
26	chr6:35270200-35271600	Enhancers	Fetal Intestine Large	intestine
27	chr6:35270200-35271600	Enhancers	Placenta Amnion	Placenta Amnion
28	chr6:35270200-35271600	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr6:35270200-35271600	Flanking Active TSS	GM12878-XiMat	blood
30	chr6:35270200-35271800	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr6:35270200-35271800	Enhancers	Rectal Mucosa Donor 31	rectum
32	chr6:35270200-35272800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
33	chr6:35270400-35271400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr6:35270400-35271400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr6:35270400-35271400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
36	chr6:35270400-35271600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
37	chr6:35270400-35271600	Enhancers	Hela-S3	cervix
38	chr6:35270600-35271400	Enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr6:35270600-35271400	Enhancers	Colonic Mucosa	Colon
40	chr6:35270600-35271600	Flanking Active TSS	Duodenum Mucosa	Duodenum
41	chr6:35270600-35277400	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr6:35270600-35278200	Weak transcription	Esophagus	oesophagus
43	chr6:35270800-35271400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr6:35270800-35271400	Transcr. at gene 5' and 3'	Fetal Thymus	thymus
45	chr6:35270800-35271400	Enhancers	Skeletal Muscle Female	skeletal muscle
46	chr6:35270800-35272400	Transcr. at gene 5' and 3'	Primary T regulatory cells fromperipheralblood	blood
47	chr6:35271000-35271400	Enhancers	HUES6 Cell Line	embryonic stem cell
48	chr6:35271000-35271400	Transcr. at gene 5' and 3'	Primary T cells fromperipheralblood	blood
49	chr6:35271000-35271400	Transcr. at gene 5' and 3'	Dnd41	blood
50	chr6:35271000-35271600	Flanking Active TSS	Primary hematopoietic stem cells	blood

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