Variant report

Variant	rs55867804
Chromosome Location	chr6:35249633-35249634
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35213830..35215728-chr6:35248385..35249951,2	K562	blood:
2	chr6:35249084..35250623-chr6:35257544..35259252,2	K562	blood:
3	chr6:35249001..35251643-chr6:35253439..35256338,3	MCF-7	breast:
4	chr6:35248636..35252801-chr6:35252914..35256314,5	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs55654367	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55941554	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56122629	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57977624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57996659	0.83[AFR][1000 genomes]
rs60414437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60528357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61076662	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61250266	1.00[AMR][1000 genomes]
rs6902267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6933596	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6936907	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6940626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745084	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745085	1.00[AMR][1000 genomes]
rs73745128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745132	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745133	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745141	1.00[AFR][1000 genomes]
rs73745145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745153	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745159	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745179	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745182	1.00[AMR][1000 genomes]
rs73745184	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745186	1.00[AMR][1000 genomes]
rs73745194	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748034	1.00[AMR][1000 genomes]
rs73748043	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748047	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748049	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748057	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748069	1.00[AMR][1000 genomes]
rs73748070	1.00[AMR][1000 genomes]
rs73748071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758047	chr6:35168116-35291002	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	esv2759419	chr6:35168116-35291002	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35228400-35250200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:35228600-35253200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:35228800-35251400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:35229000-35250400	Weak transcription	Fetal Brain Male	brain
5	chr6:35229200-35250200	Weak transcription	Pancreas	Pancrea
6	chr6:35232400-35250200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr6:35232600-35265200	Weak transcription	Stomach Mucosa	stomach
8	chr6:35233800-35258400	Weak transcription	Small Intestine	intestine
9	chr6:35237800-35253400	Weak transcription	Gastric	stomach
10	chr6:35237800-35264800	Weak transcription	K562	blood
11	chr6:35243200-35250000	Weak transcription	HSMMtube	muscle
12	chr6:35243200-35250200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:35243400-35256800	Weak transcription	NHEK	skin
14	chr6:35243400-35265000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr6:35243600-35250200	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr6:35243600-35250200	Weak transcription	HSMM	muscle
17	chr6:35243600-35250800	Weak transcription	HMEC	breast
18	chr6:35243600-35254000	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr6:35243800-35250200	Weak transcription	Ovary	ovary
20	chr6:35243800-35250200	Weak transcription	Psoas Muscle	Psoas
21	chr6:35243800-35250800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr6:35244000-35250400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr6:35244000-35253800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr6:35244600-35253600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr6:35246800-35254000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr6:35247200-35253000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr6:35247400-35250400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr6:35247600-35249800	Weak transcription	Brain Germinal Matrix	brain
29	chr6:35247600-35250600	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr6:35247800-35255400	Strong transcription	Fetal Muscle Trunk	muscle
31	chr6:35247800-35264600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr6:35248000-35264800	Strong transcription	Stomach Smooth Muscle	stomach
33	chr6:35248200-35253400	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr6:35248400-35251800	Strong transcription	Lung	lung
35	chr6:35248400-35255000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr6:35248400-35262200	Strong transcription	Primary T cells fromperipheralblood	blood
37	chr6:35248400-35263400	Strong transcription	Rectal Smooth Muscle	rectum
38	chr6:35248400-35264400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr6:35248600-35253800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr6:35248600-35264200	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chr6:35248600-35264200	Strong transcription	Fetal Thymus	thymus
42	chr6:35248600-35264400	Strong transcription	Monocytes-CD14+_RO01746	blood
43	chr6:35248800-35249800	Weak transcription	NH-A	brain
44	chr6:35248800-35250200	Weak transcription	HUVEC	blood vessel
45	chr6:35248800-35251000	Strong transcription	Fetal Muscle Leg	muscle
46	chr6:35248800-35251400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr6:35248800-35251400	Strong transcription	Pancreatic Islets	Pancreatic Islet
48	chr6:35248800-35251600	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr6:35248800-35251800	Strong transcription	HUES6 Cell Line	embryonic stem cell
50	chr6:35248800-35251800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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