Variant report

Variant	rs73748043
Chromosome Location	chr6:35158019-35158020
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35157511..35159757-chr6:35160633..35163459,2	K562	blood:
2	chr6:35150577..35155004-chr6:35155292..35158233,5	MCF-7	breast:
3	chr6:35141167..35143005-chr6:35157807..35160174,2	MCF-7	breast:
4	chr6:35148681..35155694-chr6:35156262..35164857,12	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs55654367	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55867804	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55941554	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56122629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57977624	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60414437	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60528357	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61076662	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61250266	1.00[AMR][1000 genomes]
rs6902267	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6933596	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6936907	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6940626	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745079	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745084	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745085	1.00[AMR][1000 genomes]
rs73745128	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745130	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745132	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745133	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745141	0.83[AFR][1000 genomes]
rs73745145	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745153	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745159	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745160	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745177	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745179	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745181	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745182	1.00[AMR][1000 genomes]
rs73745184	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745186	1.00[AMR][1000 genomes]
rs73745194	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748034	1.00[AMR][1000 genomes]
rs73748047	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748049	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748057	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748062	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748063	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748065	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748069	1.00[AMR][1000 genomes]
rs73748070	1.00[AMR][1000 genomes]
rs73748071	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3428128	chr6:35150524-35225843	Bivalent Enhancer Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35151800-35159600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:35154000-35158200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:35154000-35158200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:35154000-35169800	Weak transcription	Right Atrium	heart
5	chr6:35154200-35158200	Weak transcription	NHDF-Ad	bronchial
6	chr6:35154200-35163400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr6:35154400-35159600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:35154400-35169200	Weak transcription	Fetal Heart	heart
9	chr6:35157800-35160400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:35158000-35158200	Enhancers	Aorta	Aorta
11	chr6:35158000-35158400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:35158000-35158600	Enhancers	Muscle Satellite Cultured Cells	--
13	chr6:35158000-35158600	Enhancers	Osteobl	bone
14	chr6:35158000-35159200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr6:35158000-35159400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links