Variant report

Variant	rs73745130
Chromosome Location	chr6:35202751-35202752
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35195154..35200305-chr6:35202213..35207133,5	K562	blood:
2	chr6:35132585..35134492-chr6:35202340..35203841,2	MCF-7	breast:
3	chr6:34938891..34940598-chr6:35202108..35204116,2	K562	blood:
4	chr6:35196232..35199243-chr6:35200230..35204307,5	K562	blood:
5	chr6:35202209..35206634-chr6:35208195..35211678,7	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs55654367	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55867804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55941554	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56122629	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57977624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57996659	0.83[AFR][1000 genomes]
rs60414437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60528357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61076662	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61250266	1.00[AMR][1000 genomes]
rs6902267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6933596	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6936907	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6940626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745079	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745084	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745085	1.00[AMR][1000 genomes]
rs73745128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745132	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745133	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745141	1.00[AFR][1000 genomes]
rs73745145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745153	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745159	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745179	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745182	1.00[AMR][1000 genomes]
rs73745184	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745186	1.00[AMR][1000 genomes]
rs73745194	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748034	1.00[AMR][1000 genomes]
rs73748043	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748047	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748049	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748057	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748069	1.00[AMR][1000 genomes]
rs73748070	1.00[AMR][1000 genomes]
rs73748071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3428128	chr6:35150524-35225843	Bivalent Enhancer Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2758047	chr6:35168116-35291002	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	esv2759419	chr6:35168116-35291002	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35182400-35209000	Weak transcription	A549	lung
2	chr6:35184800-35205600	Weak transcription	Fetal Brain Female	brain
3	chr6:35186200-35202800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:35186400-35212000	Weak transcription	NHDF-Ad	bronchial
5	chr6:35186600-35204600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr6:35186600-35205400	Weak transcription	Fetal Muscle Trunk	muscle
7	chr6:35186800-35212000	Weak transcription	Dnd41	blood
8	chr6:35188200-35205800	Weak transcription	Fetal Kidney	kidney
9	chr6:35188200-35206400	Weak transcription	NH-A	brain
10	chr6:35189600-35205800	Weak transcription	Brain Germinal Matrix	brain
11	chr6:35190000-35205600	Weak transcription	Fetal Muscle Leg	muscle
12	chr6:35190200-35212000	Weak transcription	Brain Angular Gyrus	brain
13	chr6:35191200-35212000	Weak transcription	Primary T cells from cord blood	blood
14	chr6:35191400-35226000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:35192200-35211400	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr6:35194000-35209400	Weak transcription	Thymus	Thymus
17	chr6:35194000-35225600	Weak transcription	Primary B cells from cord blood	blood
18	chr6:35194800-35202800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:35195600-35210600	Weak transcription	Spleen	Spleen
20	chr6:35197000-35205600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr6:35199200-35211800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr6:35199200-35212200	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr6:35199400-35208800	Weak transcription	Brain Cingulate Gyrus	brain
24	chr6:35199400-35209200	Weak transcription	Adipose Nuclei	Adipose
25	chr6:35199400-35211800	Weak transcription	Brain Hippocampus Middle	brain
26	chr6:35199400-35212000	Weak transcription	Brain Anterior Caudate	brain
27	chr6:35199400-35216200	Weak transcription	Brain Substantia Nigra	brain
28	chr6:35199600-35203000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr6:35199600-35203000	Strong transcription	Fetal Stomach	stomach
30	chr6:35199600-35204000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr6:35199600-35205400	Weak transcription	Rectal Smooth Muscle	rectum
32	chr6:35199600-35209800	Weak transcription	Gastric	stomach
33	chr6:35199600-35210400	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr6:35199600-35211200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr6:35199600-35215600	Weak transcription	Hela-S3	cervix
36	chr6:35199600-35226600	Weak transcription	Esophagus	oesophagus
37	chr6:35199800-35205600	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr6:35199800-35205600	Weak transcription	Right Atrium	heart
39	chr6:35199800-35205600	Weak transcription	Stomach Smooth Muscle	stomach
40	chr6:35199800-35206200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr6:35199800-35206800	Weak transcription	Ovary	ovary
42	chr6:35199800-35212200	Weak transcription	HepG2	liver
43	chr6:35199800-35226200	Weak transcription	Pancreas	Pancrea
44	chr6:35200000-35204200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr6:35200000-35206000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr6:35200200-35204000	Weak transcription	Left Ventricle	heart
47	chr6:35200400-35205400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr6:35200400-35205600	Strong transcription	Osteobl	bone
49	chr6:35200600-35225000	Weak transcription	Fetal Brain Male	brain
50	chr6:35201200-35205800	Strong transcription	Aorta	Aorta

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