Variant report

Variant	rs73745141
Chromosome Location	chr6:35225550-35225551
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35225346..35227530-chr6:35309507..35311733,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112033	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs55654367	0.83[AFR][1000 genomes]
rs55867804	1.00[AFR][1000 genomes]
rs55941554	0.83[AFR][1000 genomes]
rs56122629	0.83[AFR][1000 genomes]
rs57977624	1.00[AFR][1000 genomes]
rs57996659	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59757151	1.00[AMR][1000 genomes]
rs60414437	1.00[AFR][1000 genomes]
rs60528357	1.00[AFR][1000 genomes]
rs61076662	0.83[AFR][1000 genomes]
rs6902267	1.00[AFR][1000 genomes]
rs6933596	1.00[AFR][1000 genomes]
rs6936907	1.00[AFR][1000 genomes]
rs6940626	1.00[AFR][1000 genomes]
rs73745079	0.83[AFR][1000 genomes]
rs73745084	0.83[AFR][1000 genomes]
rs73745128	1.00[AFR][1000 genomes]
rs73745130	1.00[AFR][1000 genomes]
rs73745132	1.00[AFR][1000 genomes]
rs73745133	1.00[AFR][1000 genomes]
rs73745145	1.00[AFR][1000 genomes]
rs73745153	1.00[AFR][1000 genomes]
rs73745159	1.00[AFR][1000 genomes]
rs73745160	1.00[AFR][1000 genomes]
rs73745177	1.00[AFR][1000 genomes]
rs73745179	1.00[AFR][1000 genomes]
rs73745181	1.00[AFR][1000 genomes]
rs73745184	1.00[AFR][1000 genomes]
rs73745194	1.00[AFR][1000 genomes]
rs73748033	1.00[AMR][1000 genomes]
rs73748043	0.83[AFR][1000 genomes]
rs73748047	0.83[AFR][1000 genomes]
rs73748049	1.00[AFR][1000 genomes]
rs73748057	1.00[AFR][1000 genomes]
rs73748062	1.00[AFR][1000 genomes]
rs73748063	1.00[AFR][1000 genomes]
rs73748065	1.00[AFR][1000 genomes]
rs73748071	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3428128	chr6:35150524-35225843	Bivalent Enhancer Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2758047	chr6:35168116-35291002	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	esv2759419	chr6:35168116-35291002	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35191400-35226000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:35194000-35225600	Weak transcription	Primary B cells from cord blood	blood
3	chr6:35199600-35226600	Weak transcription	Esophagus	oesophagus
4	chr6:35199800-35226200	Weak transcription	Pancreas	Pancrea
5	chr6:35201400-35226200	Weak transcription	Stomach Mucosa	stomach
6	chr6:35202600-35225800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr6:35203400-35226000	Weak transcription	HSMMtube	muscle
8	chr6:35205600-35226000	Weak transcription	HSMM	muscle
9	chr6:35207400-35226200	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr6:35208200-35226000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr6:35208400-35226000	Weak transcription	NHEK	skin
12	chr6:35209800-35226400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr6:35211000-35226000	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr6:35212400-35226000	Weak transcription	Primary B cells from peripheral blood	blood
15	chr6:35213200-35226200	Weak transcription	Gastric	stomach
16	chr6:35213400-35225600	Weak transcription	Fetal Kidney	kidney
17	chr6:35213400-35226000	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr6:35213400-35226000	Weak transcription	NH-A	brain
19	chr6:35213600-35225600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr6:35214000-35225800	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr6:35214000-35226000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr6:35214400-35225600	Weak transcription	Dnd41	blood
23	chr6:35214400-35225800	Weak transcription	Fetal Lung	lung
24	chr6:35214400-35226000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr6:35214400-35226600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr6:35214600-35226200	Weak transcription	Aorta	Aorta
27	chr6:35215000-35226000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr6:35216400-35225800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr6:35216600-35225600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr6:35216800-35226000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr6:35217000-35225800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr6:35217400-35226400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr6:35217600-35226000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr6:35217600-35226000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr6:35217600-35226200	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr6:35217800-35226000	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr6:35217800-35226000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr6:35217800-35226200	Weak transcription	Psoas Muscle	Psoas
39	chr6:35218000-35226000	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr6:35218000-35226000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr6:35218000-35226000	Weak transcription	Fetal Intestine Small	intestine
42	chr6:35218000-35226600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr6:35218200-35226000	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr6:35218200-35226000	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr6:35218200-35226000	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr6:35218200-35226000	Weak transcription	Ovary	ovary
47	chr6:35218200-35226000	Weak transcription	Right Atrium	heart
48	chr6:35218800-35226000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr6:35218800-35226200	Weak transcription	Brain Substantia Nigra	brain
50	chr6:35218800-35226200	Weak transcription	Lung	lung

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