Variant report

Variant	rs73745133
Chromosome Location	chr6:35212596-35212597
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:35211292..35213098-chr6:35218408..35220961,2	K562	blood:
2	chr6:35203567..35205850-chr6:35210606..35213440,2	MCF-7	breast:
3	chr6:35211385..35214210-chr6:35227396..35229184,2	MCF-7	breast:
4	chr6:35208399..35210784-chr6:35211511..35213667,2	MCF-7	breast:
5	chr6:35210963..35213081-chr6:35462686..35465229,2	K562	blood:
6	chr6:35210963..35213081-chr6:35462686..35466040,3	K562	blood:
7	chr6:35211520..35214360-chr6:35225180..35229197,4	K562	blood:
8	chr6:35195991..35200691-chr6:35207151..35212650,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000007866	Chromatin interaction
ENSG00000065029	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs55654367	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55867804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55941554	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56122629	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57977624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57996659	0.83[AFR][1000 genomes]
rs60414437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60528357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61076662	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61250266	1.00[AMR][1000 genomes]
rs6902267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6933596	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6936907	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6940626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745079	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745084	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745085	1.00[AMR][1000 genomes]
rs73745128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745132	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745141	1.00[AFR][1000 genomes]
rs73745145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745153	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745159	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745179	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745182	1.00[AMR][1000 genomes]
rs73745184	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745186	1.00[AMR][1000 genomes]
rs73745194	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748034	1.00[AMR][1000 genomes]
rs73748043	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748047	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748049	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748057	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748069	1.00[AMR][1000 genomes]
rs73748070	1.00[AMR][1000 genomes]
rs73748071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3428128	chr6:35150524-35225843	Bivalent Enhancer Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2758047	chr6:35168116-35291002	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	esv2759419	chr6:35168116-35291002	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35191400-35226000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:35194000-35225600	Weak transcription	Primary B cells from cord blood	blood
3	chr6:35199400-35216200	Weak transcription	Brain Substantia Nigra	brain
4	chr6:35199600-35215600	Weak transcription	Hela-S3	cervix
5	chr6:35199600-35226600	Weak transcription	Esophagus	oesophagus
6	chr6:35199800-35226200	Weak transcription	Pancreas	Pancrea
7	chr6:35200600-35225000	Weak transcription	Fetal Brain Male	brain
8	chr6:35201400-35226200	Weak transcription	Stomach Mucosa	stomach
9	chr6:35202600-35225800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr6:35203400-35226000	Weak transcription	HSMMtube	muscle
11	chr6:35204400-35215400	Weak transcription	GM12878-XiMat	blood
12	chr6:35205600-35226000	Weak transcription	HSMM	muscle
13	chr6:35205800-35213400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:35206000-35215400	Weak transcription	K562	blood
15	chr6:35206600-35215600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:35206800-35216000	Strong transcription	Osteobl	bone
17	chr6:35207000-35213000	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr6:35207000-35215800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:35207400-35226200	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr6:35207800-35214600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr6:35207800-35224000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:35208000-35215800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr6:35208000-35216000	Weak transcription	HUVEC	blood vessel
24	chr6:35208200-35226000	Weak transcription	Primary hematopoietic stem cells	blood
25	chr6:35208400-35213600	Weak transcription	Lung	lung
26	chr6:35208400-35226000	Weak transcription	NHEK	skin
27	chr6:35208600-35214600	Strong transcription	Fetal Intestine Small	intestine
28	chr6:35208600-35220200	Strong transcription	Fetal Stomach	stomach
29	chr6:35209000-35216800	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr6:35209000-35217400	Weak transcription	Colonic Mucosa	Colon
31	chr6:35209200-35214600	Strong transcription	Fetal Muscle Trunk	muscle
32	chr6:35209200-35216400	Weak transcription	Brain Cingulate Gyrus	brain
33	chr6:35209400-35213800	Strong transcription	Thymus	Thymus
34	chr6:35209400-35216200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr6:35209400-35216200	Weak transcription	Colon Smooth Muscle	Colon
36	chr6:35209600-35213000	Strong transcription	Right Ventricle	heart
37	chr6:35209600-35213400	Strong transcription	Fetal Kidney	kidney
38	chr6:35209600-35214600	Strong transcription	Fetal Brain Female	brain
39	chr6:35209600-35214800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr6:35209600-35216200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr6:35209600-35216400	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr6:35209600-35216800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr6:35209800-35213000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr6:35209800-35214400	Strong transcription	Fetal Muscle Leg	muscle
45	chr6:35209800-35214400	Strong transcription	Stomach Smooth Muscle	stomach
46	chr6:35209800-35216600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr6:35209800-35220000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr6:35209800-35226400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr6:35210000-35214600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
50	chr6:35210000-35214600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links