Variant report

Variant	rs73748069
Chromosome Location	chr6:35177805-35177806
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TEAD4	chr6:35177572-35178081	ECC-1	luminal epithelium:	n/a	n/a
2	TEAD4	chr6:35177625-35177982	H1-hESC	embryonic stem cell:	n/a	n/a
3	TEAD4	chr6:35177556-35178013	ECC-1	luminal epithelium:	n/a	n/a
4	RCOR1	chr6:35177508-35177881	Hela-S3	cervix:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35149389..35151264-chr6:35177090..35178879,2	MCF-7	breast:
2	chr6:34384595..34386120-chr6:35175075..35178043,2	K562	blood:
3	chr6:35112797..35115026-chr6:35176369..35178563,2	MCF-7	breast:
4	chr6:35175233..35177810-chr6:35181821..35183901,3	MCF-7	breast:
5	chr6:35177739..35179497-chr6:35194897..35197344,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs55654367	1.00[AMR][1000 genomes]
rs55867804	1.00[AMR][1000 genomes]
rs55941554	1.00[AMR][1000 genomes]
rs56122629	1.00[AMR][1000 genomes]
rs57977624	1.00[AMR][1000 genomes]
rs60414437	1.00[AMR][1000 genomes]
rs60528357	1.00[AMR][1000 genomes]
rs61076662	1.00[AMR][1000 genomes]
rs61250266	1.00[AMR][1000 genomes]
rs6902267	1.00[AMR][1000 genomes]
rs6933596	1.00[AMR][1000 genomes]
rs6936907	1.00[AMR][1000 genomes]
rs6940626	1.00[AMR][1000 genomes]
rs73745079	1.00[AMR][1000 genomes]
rs73745084	1.00[AMR][1000 genomes]
rs73745085	1.00[AMR][1000 genomes]
rs73745128	1.00[AMR][1000 genomes]
rs73745130	1.00[AMR][1000 genomes]
rs73745132	1.00[AMR][1000 genomes]
rs73745133	1.00[AMR][1000 genomes]
rs73745145	1.00[AMR][1000 genomes]
rs73745153	1.00[AMR][1000 genomes]
rs73745159	1.00[AMR][1000 genomes]
rs73745160	1.00[AMR][1000 genomes]
rs73745177	1.00[AMR][1000 genomes]
rs73745179	1.00[AMR][1000 genomes]
rs73745181	1.00[AMR][1000 genomes]
rs73745182	1.00[AMR][1000 genomes]
rs73745184	1.00[AMR][1000 genomes]
rs73745186	1.00[AMR][1000 genomes]
rs73745194	1.00[AMR][1000 genomes]
rs73748034	1.00[AMR][1000 genomes]
rs73748043	1.00[AMR][1000 genomes]
rs73748047	1.00[AMR][1000 genomes]
rs73748049	1.00[AMR][1000 genomes]
rs73748057	1.00[AMR][1000 genomes]
rs73748062	1.00[AMR][1000 genomes]
rs73748063	1.00[AMR][1000 genomes]
rs73748065	1.00[AMR][1000 genomes]
rs73748070	1.00[AMR][1000 genomes]
rs73748071	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3428128	chr6:35150524-35225843	Bivalent Enhancer Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2758047	chr6:35168116-35291002	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	esv2759419	chr6:35168116-35291002	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35174600-35180600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:35176000-35178000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:35176600-35180600	Weak transcription	Osteobl	bone
4	chr6:35177000-35180400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:35177600-35178000	Enhancers	Fetal Heart	heart
6	chr6:35177600-35178000	Enhancers	Placenta Amnion	Placenta Amnion

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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