Variant report

Variant	rs73745182
Chromosome Location	chr6:35264828-35264829
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TEAD4	chr6:35264780-35266384	K562	blood:	n/a	n/a
2	CTCF	chr6:35264740-35264890	HA-sp	spinal cord:	n/a	n/a
3	POLR2A	chr6:35263796-35266073	K562	blood:	n/a	n/a

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:35257372..35267692-chr6:35433856..35438688,25	K562	blood:
2	chr6:35264065..35266185-chr6:35435418..35437067,2	MCF-7	breast:
3	chr6:35260730..35269335-chr6:35433870..35444063,22	MCF-7	breast:
4	chr6:35261657..35264844-chr6:35438190..35440165,4	MCF-7	breast:
5	chr6:35261055..35266113-chr6:35308586..35312212,6	K562	blood:
6	chr6:35262981..35267829-chr6:35418945..35424124,7	K562	blood:
7	chr6:35257372..35267871-chr6:35433266..35439192,25	K562	blood:
8	chr6:35232808..35235084-chr6:35262223..35264911,2	K562	blood:
9	chr6:35260793..35263953-chr6:35263989..35266366,4	K562	blood:
10	chr6:35263661..35265616-chr6:35463054..35466039,2	MCF-7	breast:

No data

Variant related genes	Relation type
DEF6	TF binding region
ENSG00000065029	Chromatin interaction
ENSG00000198755	Chromatin interaction
ENSG00000007866	Chromatin interaction
ENSG00000112039	Chromatin interaction
ENSG00000112033	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs55654367	1.00[AMR][1000 genomes]
rs55867804	1.00[AMR][1000 genomes]
rs55941554	1.00[AMR][1000 genomes]
rs57977624	1.00[AMR][1000 genomes]
rs60414437	1.00[AMR][1000 genomes]
rs60528357	1.00[AMR][1000 genomes]
rs61076662	1.00[AMR][1000 genomes]
rs61250266	1.00[AMR][1000 genomes]
rs6902267	1.00[AMR][1000 genomes]
rs6933596	1.00[AMR][1000 genomes]
rs6936907	1.00[AMR][1000 genomes]
rs6940626	1.00[AMR][1000 genomes]
rs73745128	1.00[AMR][1000 genomes]
rs73745130	1.00[AMR][1000 genomes]
rs73745132	1.00[AMR][1000 genomes]
rs73745133	1.00[AMR][1000 genomes]
rs73745145	1.00[AMR][1000 genomes]
rs73745153	1.00[AMR][1000 genomes]
rs73745159	1.00[AMR][1000 genomes]
rs73745160	1.00[AMR][1000 genomes]
rs73745177	1.00[AMR][1000 genomes]
rs73745179	1.00[AMR][1000 genomes]
rs73745181	1.00[AMR][1000 genomes]
rs73745184	1.00[AMR][1000 genomes]
rs73745186	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745194	1.00[AMR][1000 genomes]
rs73748034	1.00[AMR][1000 genomes]
rs73748043	1.00[AMR][1000 genomes]
rs73748047	1.00[AMR][1000 genomes]
rs73748049	1.00[AMR][1000 genomes]
rs73748057	1.00[AMR][1000 genomes]
rs73748062	1.00[AMR][1000 genomes]
rs73748063	1.00[AMR][1000 genomes]
rs73748065	1.00[AMR][1000 genomes]
rs73748069	1.00[AMR][1000 genomes]
rs73748070	1.00[AMR][1000 genomes]
rs73748071	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758047	chr6:35168116-35291002	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	esv2759419	chr6:35168116-35291002	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35232600-35265200	Weak transcription	Stomach Mucosa	stomach
2	chr6:35243400-35265000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:35248800-35265000	Strong transcription	Fetal Intestine Small	intestine
4	chr6:35248800-35265000	Strong transcription	Fetal Stomach	stomach
5	chr6:35248800-35265400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:35248800-35265800	Strong transcription	Brain Inferior Temporal Lobe	brain
7	chr6:35249000-35265000	Strong transcription	Liver	Liver
8	chr6:35249000-35265200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:35249000-35265200	Strong transcription	Osteobl	bone
10	chr6:35249000-35265400	Weak transcription	Right Atrium	heart
11	chr6:35249000-35266800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:35249200-35265400	Strong transcription	Fetal Brain Female	brain
13	chr6:35251000-35266800	Weak transcription	Fetal Brain Male	brain
14	chr6:35251400-35265000	Weak transcription	HUVEC	blood vessel
15	chr6:35252800-35265000	Strong transcription	Cortex derived primary cultured neurospheres	brain
16	chr6:35253200-35265200	Strong transcription	Brain Substantia Nigra	brain
17	chr6:35253600-35265200	Strong transcription	Brain Germinal Matrix	brain
18	chr6:35254600-35265000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr6:35255400-35265000	Weak transcription	NH-A	brain
20	chr6:35256400-35265200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:35256600-35265000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr6:35257600-35265000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr6:35257600-35265000	Weak transcription	Fetal Heart	heart
24	chr6:35258400-35265000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr6:35259600-35265000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr6:35260000-35265000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr6:35260800-35265600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr6:35261000-35265600	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr6:35261200-35270400	Weak transcription	Hela-S3	cervix
30	chr6:35261600-35265000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr6:35261600-35265600	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr6:35261800-35265200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr6:35261800-35265600	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr6:35261800-35265600	Weak transcription	Small Intestine	intestine
35	chr6:35263000-35265000	Weak transcription	Primary T helper cells PMA-I stimulated	--
36	chr6:35263000-35265000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr6:35263000-35265400	Genic enhancers	Skeletal Muscle Female	skeletal muscle
38	chr6:35263000-35265600	Weak transcription	Fetal Kidney	kidney
39	chr6:35263000-35270400	Weak transcription	A549	lung
40	chr6:35263200-35265000	Weak transcription	Fetal Lung	lung
41	chr6:35263200-35265000	Weak transcription	HepG2	liver
42	chr6:35263200-35265200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr6:35263200-35265400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr6:35263200-35265600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr6:35263200-35270600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr6:35263200-35270600	Weak transcription	NHDF-Ad	bronchial
47	chr6:35263400-35265000	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr6:35263400-35265000	Weak transcription	Pancreas	Pancrea
49	chr6:35263400-35265000	Weak transcription	Rectal Smooth Muscle	rectum
50	chr6:35263400-35265600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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