Variant report

Variant	rs61250266
Chromosome Location	chr6:35206628-35206629
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35195154..35200305-chr6:35202213..35207133,5	K562	blood:
2	chr6:35132640..35135454-chr6:35205817..35208602,3	MCF-7	breast:
3	chr6:35188260..35190147-chr6:35205667..35207207,2	K562	blood:
4	chr6:35202209..35206634-chr6:35208195..35211678,7	K562	blood:
5	chr6:35203262..35205063-chr6:35205452..35207429,2	K562	blood:
6	chr6:35205769..35207687-chr6:35225072..35226945,2	K562	blood:

Variant related genes	Relation type
ENSG00000065029	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs55654367	1.00[AMR][1000 genomes]
rs55867804	1.00[AMR][1000 genomes]
rs55941554	1.00[AMR][1000 genomes]
rs56122629	1.00[AMR][1000 genomes]
rs57977624	1.00[AMR][1000 genomes]
rs60414437	1.00[AMR][1000 genomes]
rs60528357	1.00[AMR][1000 genomes]
rs61076662	1.00[AMR][1000 genomes]
rs6902267	1.00[AMR][1000 genomes]
rs6933596	1.00[AMR][1000 genomes]
rs6936907	1.00[AMR][1000 genomes]
rs6940626	1.00[AMR][1000 genomes]
rs73745079	1.00[AMR][1000 genomes]
rs73745084	1.00[AMR][1000 genomes]
rs73745085	1.00[AMR][1000 genomes]
rs73745128	1.00[AMR][1000 genomes]
rs73745130	1.00[AMR][1000 genomes]
rs73745132	1.00[AMR][1000 genomes]
rs73745133	1.00[AMR][1000 genomes]
rs73745145	1.00[AMR][1000 genomes]
rs73745153	1.00[AMR][1000 genomes]
rs73745159	1.00[AMR][1000 genomes]
rs73745160	1.00[AMR][1000 genomes]
rs73745177	1.00[AMR][1000 genomes]
rs73745179	1.00[AMR][1000 genomes]
rs73745181	1.00[AMR][1000 genomes]
rs73745182	1.00[AMR][1000 genomes]
rs73745184	1.00[AMR][1000 genomes]
rs73745186	1.00[AMR][1000 genomes]
rs73745194	1.00[AMR][1000 genomes]
rs73748034	1.00[AMR][1000 genomes]
rs73748043	1.00[AMR][1000 genomes]
rs73748047	1.00[AMR][1000 genomes]
rs73748049	1.00[AMR][1000 genomes]
rs73748057	1.00[AMR][1000 genomes]
rs73748062	1.00[AMR][1000 genomes]
rs73748063	1.00[AMR][1000 genomes]
rs73748065	1.00[AMR][1000 genomes]
rs73748069	1.00[AMR][1000 genomes]
rs73748070	1.00[AMR][1000 genomes]
rs73748071	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3428128	chr6:35150524-35225843	Bivalent Enhancer Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2758047	chr6:35168116-35291002	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	esv2759419	chr6:35168116-35291002	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35182400-35209000	Weak transcription	A549	lung
2	chr6:35186400-35212000	Weak transcription	NHDF-Ad	bronchial
3	chr6:35186800-35212000	Weak transcription	Dnd41	blood
4	chr6:35190200-35212000	Weak transcription	Brain Angular Gyrus	brain
5	chr6:35191200-35212000	Weak transcription	Primary T cells from cord blood	blood
6	chr6:35191400-35226000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:35192200-35211400	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr6:35194000-35209400	Weak transcription	Thymus	Thymus
9	chr6:35194000-35225600	Weak transcription	Primary B cells from cord blood	blood
10	chr6:35195600-35210600	Weak transcription	Spleen	Spleen
11	chr6:35199200-35211800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:35199200-35212200	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr6:35199400-35208800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr6:35199400-35209200	Weak transcription	Adipose Nuclei	Adipose
15	chr6:35199400-35211800	Weak transcription	Brain Hippocampus Middle	brain
16	chr6:35199400-35212000	Weak transcription	Brain Anterior Caudate	brain
17	chr6:35199400-35216200	Weak transcription	Brain Substantia Nigra	brain
18	chr6:35199600-35209800	Weak transcription	Gastric	stomach
19	chr6:35199600-35210400	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr6:35199600-35211200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr6:35199600-35215600	Weak transcription	Hela-S3	cervix
22	chr6:35199600-35226600	Weak transcription	Esophagus	oesophagus
23	chr6:35199800-35206800	Weak transcription	Ovary	ovary
24	chr6:35199800-35212200	Weak transcription	HepG2	liver
25	chr6:35199800-35226200	Weak transcription	Pancreas	Pancrea
26	chr6:35200600-35225000	Weak transcription	Fetal Brain Male	brain
27	chr6:35201400-35226200	Weak transcription	Stomach Mucosa	stomach
28	chr6:35201600-35211800	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr6:35202600-35225800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr6:35203400-35226000	Weak transcription	HSMMtube	muscle
31	chr6:35203600-35210600	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr6:35204000-35207000	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr6:35204000-35208400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
34	chr6:35204000-35209000	Enhancers	Left Ventricle	heart
35	chr6:35204200-35208400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
36	chr6:35204400-35207400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr6:35204400-35215400	Weak transcription	GM12878-XiMat	blood
38	chr6:35204600-35207400	Enhancers	Placenta Amnion	Placenta Amnion
39	chr6:35204600-35207800	Weak transcription	NHEK	skin
40	chr6:35204600-35208000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
41	chr6:35204600-35208600	Genic enhancers	Fetal Stomach	stomach
42	chr6:35204800-35207800	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr6:35205000-35207400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr6:35205000-35207800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr6:35205200-35207800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr6:35205200-35208000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr6:35205400-35207000	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr6:35205400-35207600	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
49	chr6:35205400-35207600	Enhancers	Fetal Lung	lung
50	chr6:35205400-35208200	Enhancers	Primary hematopoietic stem cells	blood

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