Variant report

Variant	rs6902267
Chromosome Location	chr6:35251671-35251672
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35250607..35252613-chr6:35252914..35254653,2	K562	blood:
2	chr6:35251015..35257008-chr6:35259512..35261942,5	K562	blood:
3	chr6:35227633..35229883-chr6:35250389..35252972,3	K562	blood:
4	chr6:35235219..35237440-chr6:35250503..35252576,2	MCF-7	breast:
5	chr6:35248636..35252801-chr6:35252914..35256314,5	K562	blood:

Variant related genes	Relation type
ENSG00000065029	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs55654367	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55867804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55941554	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56122629	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57977624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57996659	0.83[AFR][1000 genomes]
rs60414437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60528357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61076662	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61250266	1.00[AMR][1000 genomes]
rs6933596	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6936907	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6940626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745084	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745085	1.00[AMR][1000 genomes]
rs73745128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745132	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745133	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745141	1.00[AFR][1000 genomes]
rs73745145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745153	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745159	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745179	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745182	1.00[AMR][1000 genomes]
rs73745184	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745186	1.00[AMR][1000 genomes]
rs73745194	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748034	1.00[AMR][1000 genomes]
rs73748043	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748047	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748049	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748057	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748069	1.00[AMR][1000 genomes]
rs73748070	1.00[AMR][1000 genomes]
rs73748071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758047	chr6:35168116-35291002	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	esv2759419	chr6:35168116-35291002	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35228600-35253200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:35232600-35265200	Weak transcription	Stomach Mucosa	stomach
3	chr6:35233800-35258400	Weak transcription	Small Intestine	intestine
4	chr6:35237800-35253400	Weak transcription	Gastric	stomach
5	chr6:35237800-35264800	Weak transcription	K562	blood
6	chr6:35243400-35256800	Weak transcription	NHEK	skin
7	chr6:35243400-35265000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr6:35243600-35254000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr6:35244000-35253800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:35244600-35253600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:35246800-35254000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:35247200-35253000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr6:35247800-35255400	Strong transcription	Fetal Muscle Trunk	muscle
14	chr6:35247800-35264600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr6:35248000-35264800	Strong transcription	Stomach Smooth Muscle	stomach
16	chr6:35248200-35253400	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr6:35248400-35251800	Strong transcription	Lung	lung
18	chr6:35248400-35255000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:35248400-35262200	Strong transcription	Primary T cells fromperipheralblood	blood
20	chr6:35248400-35263400	Strong transcription	Rectal Smooth Muscle	rectum
21	chr6:35248400-35264400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr6:35248600-35253800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr6:35248600-35264200	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr6:35248600-35264200	Strong transcription	Fetal Thymus	thymus
25	chr6:35248600-35264400	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr6:35248800-35251800	Strong transcription	HUES6 Cell Line	embryonic stem cell
27	chr6:35248800-35251800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr6:35248800-35251800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr6:35248800-35251800	Strong transcription	Colonic Mucosa	Colon
30	chr6:35248800-35251800	Strong transcription	Rectal Mucosa Donor 31	rectum
31	chr6:35248800-35252000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr6:35248800-35252000	Strong transcription	Brain Hippocampus Middle	brain
33	chr6:35248800-35256600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
34	chr6:35248800-35257000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr6:35248800-35260000	Strong transcription	Primary B cells from peripheral blood	blood
36	chr6:35248800-35260200	Strong transcription	Primary B cells from cord blood	blood
37	chr6:35248800-35261200	Weak transcription	A549	lung
38	chr6:35248800-35262000	Strong transcription	Primary T helper cells PMA-I stimulated	--
39	chr6:35248800-35263600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr6:35248800-35263600	Strong transcription	Duodenum Mucosa	Duodenum
41	chr6:35248800-35263800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr6:35248800-35264000	Strong transcription	Duodenum Smooth Muscle	Duodenum
43	chr6:35248800-35264000	Strong transcription	Sigmoid Colon	Sigmoid Colon
44	chr6:35248800-35264000	Strong transcription	Dnd41	blood
45	chr6:35248800-35264200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr6:35248800-35264400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
47	chr6:35248800-35264400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr6:35248800-35264400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr6:35248800-35264400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr6:35248800-35264600	Strong transcription	Primary T cells from cord blood	blood

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