Variant report
| Variant | rs839914 |
|---|---|
| Chromosome Location | chr2:21025212-21025213 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:21004442..21007012-chr2:21022957..21025517,2 | MCF-7 | breast: | |
| 2 | chr2:21021142..21024833-chr2:21024982..21028146,5 | K562 | blood: | |
| 3 | chr2:21023404..21026018-chr2:21030811..21034294,3 | MCF-7 | breast: | |
| 4 | chr2:20960384..20962509-chr2:21023196..21025705,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| C2orf43 | TF binding region |
| ENSG00000118961 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:65)
| rs_ID | r2[population] |
|---|---|
| rs10176721 | 1.00[EUR][1000 genomes] |
| rs10200826 | 1.00[EUR][1000 genomes] |
| rs11893093 | 1.00[EUR][1000 genomes] |
| rs12713675 | 1.00[EUR][1000 genomes] |
| rs12720770 | 1.00[EUR][1000 genomes] |
| rs12720812 | 1.00[EUR][1000 genomes] |
| rs12720813 | 1.00[EUR][1000 genomes] |
| rs12720852 | 1.00[EUR][1000 genomes] |
| rs12720855 | 1.00[EUR][1000 genomes] |
| rs1437408 | 1.00[EUR][1000 genomes] |
| rs16988071 | 1.00[EUR][1000 genomes] |
| rs1866043 | 1.00[EUR][1000 genomes] |
| rs340605 | 1.00[EUR][1000 genomes] |
| rs340608 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs340614 | 1.00[EUR][1000 genomes] |
| rs548324 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs553687 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs571566 | 1.00[EUR][1000 genomes] |
| rs57494499 | 1.00[EUR][1000 genomes] |
| rs582107 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58696000 | 1.00[EUR][1000 genomes] |
| rs59882809 | 1.00[EUR][1000 genomes] |
| rs59995050 | 1.00[EUR][1000 genomes] |
| rs61072469 | 1.00[EUR][1000 genomes] |
| rs61478003 | 1.00[EUR][1000 genomes] |
| rs61743299 | 1.00[EUR][1000 genomes] |
| rs642152 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs648568 | 1.00[EUR][1000 genomes] |
| rs662193 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6736533 | 1.00[EUR][1000 genomes] |
| rs6759981 | 1.00[EUR][1000 genomes] |
| rs72654435 | 1.00[EUR][1000 genomes] |
| rs72888848 | 1.00[EUR][1000 genomes] |
| rs72888854 | 1.00[EUR][1000 genomes] |
| rs72888855 | 1.00[EUR][1000 genomes] |
| rs72888859 | 1.00[EUR][1000 genomes] |
| rs72890734 | 1.00[EUR][1000 genomes] |
| rs72890747 | 1.00[EUR][1000 genomes] |
| rs72890758 | 1.00[EUR][1000 genomes] |
| rs72890763 | 1.00[EUR][1000 genomes] |
| rs72890771 | 1.00[EUR][1000 genomes] |
| rs72890775 | 1.00[EUR][1000 genomes] |
| rs72890778 | 1.00[EUR][1000 genomes] |
| rs72890781 | 1.00[EUR][1000 genomes] |
| rs72890784 | 1.00[EUR][1000 genomes] |
| rs72890789 | 1.00[EUR][1000 genomes] |
| rs72890791 | 1.00[EUR][1000 genomes] |
| rs72902534 | 1.00[EUR][1000 genomes] |
| rs72902535 | 1.00[EUR][1000 genomes] |
| rs72902538 | 1.00[EUR][1000 genomes] |
| rs72902540 | 1.00[EUR][1000 genomes] |
| rs72902541 | 1.00[EUR][1000 genomes] |
| rs72902542 | 1.00[EUR][1000 genomes] |
| rs72902544 | 1.00[EUR][1000 genomes] |
| rs72902548 | 1.00[EUR][1000 genomes] |
| rs73224614 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73226544 | 1.00[EUR][1000 genomes] |
| rs73226553 | 1.00[EUR][1000 genomes] |
| rs73226559 | 1.00[EUR][1000 genomes] |
| rs73235072 | 1.00[EUR][1000 genomes] |
| rs73235079 | 1.00[EUR][1000 genomes] |
| rs73235100 | 1.00[EUR][1000 genomes] |
| rs73237114 | 1.00[EUR][1000 genomes] |
| rs73237135 | 1.00[EUR][1000 genomes] |
| rs73237147 | 1.00[EUR][1000 genomes] |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
