Variant report

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12334074	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17862333	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17862345	0.82[EUR][1000 genomes]
rs17863242	0.82[CEU][hapmap];0.93[GIH][hapmap]
rs17863257	0.82[EUR][1000 genomes]
rs17864160	0.82[CEU][hapmap]
rs17864165	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs17864170	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17864185	1.00[CEU][hapmap]
rs17864189	1.00[CEU][hapmap]
rs17865066	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17865434	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17866153	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17866314	1.00[CEU][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.88[TSI][hapmap]
rs17866414	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs17866742	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17866745	0.82[EUR][1000 genomes]
rs17866749	1.00[CEU][hapmap];0.87[CHD][hapmap];0.82[EUR][1000 genomes]
rs17867065	1.00[CEU][hapmap]
rs17867232	0.82[EUR][1000 genomes]
rs17867806	1.00[CEU][hapmap]
rs17867809	1.00[CEU][hapmap];0.81[TSI][hapmap]
rs17867821	0.82[EUR][1000 genomes]
rs17869261	1.00[CEU][hapmap]
rs17869284	1.00[CEU][hapmap]
rs17869543	0.82[EUR][1000 genomes]
rs2299554	1.00[CEU][hapmap]
rs3779537	0.87[CHD][hapmap]
rs62468892	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62468898	0.86[EUR][1000 genomes]
rs62468908	0.82[EUR][1000 genomes]
rs6957728	1.00[CEU][hapmap]
rs7805944	0.87[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889189	chr7:126699088-126963028	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1819919	chr7:126850298-126888714	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10487472	C1orf115	trans	lymphoblastoid	seeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126864400-126866600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr7:126864400-126866800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:126866000-126867200	Enhancers	HUES48 Cell Line	embryonic stem cell

Quick Search: