Variant report

Variant	rs10935113
Chromosome Location	chr3:134173091-134173092
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:134075178..134078070-chr3:134170611..134173324,2	MCF-7	breast:
2	chr3:134172520..134174830-chr3:134202741..134205403,3	MCF-7	breast:
3	chr3:134026945..134027852-chr3:134172592..134173161,2	MCF-7	breast:
4	chr3:134170227..134173961-chr3:134177457..134180784,3	MCF-7	breast:
5	chr3:134172461..134174570-chr3:134191518..134193817,2	MCF-7	breast:
6	chr3:134030014..134031539-chr3:134171269..134174017,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000182923	Chromatin interaction
ENSG00000214289	Chromatin interaction
ENSG00000129055	Chromatin interaction

Extended variants
information (count: 155 )
Associated
traits (count: 22 )

rSNPs within LD-proxies of this variant (count:154)

rs_ID	r²[population]
rs10935120	0.88[EUR][1000 genomes]
rs1138273	0.89[EUR][1000 genomes]
rs11706117	0.90[EUR][1000 genomes]
rs11708531	0.89[EUR][1000 genomes]
rs11919350	0.89[EUR][1000 genomes]
rs11927068	0.87[EUR][1000 genomes]
rs11928499	0.89[EUR][1000 genomes]
rs12490835	0.90[EUR][1000 genomes]
rs12492930	0.89[EUR][1000 genomes]
rs12637751	0.87[EUR][1000 genomes]
rs13059720	0.89[EUR][1000 genomes]
rs13065405	0.89[EUR][1000 genomes]
rs13065773	0.83[EUR][1000 genomes]
rs13081177	0.83[EUR][1000 genomes]
rs13081688	0.88[EUR][1000 genomes]
rs13087875	0.89[EUR][1000 genomes]
rs13089966	0.83[EUR][1000 genomes]
rs13096604	0.89[EUR][1000 genomes]
rs13316205	0.89[EUR][1000 genomes]
rs1357762	0.87[EUR][1000 genomes]
rs1366067	0.84[ASN][1000 genomes]
rs1391695	0.85[ASN][1000 genomes]
rs1498718	0.89[EUR][1000 genomes]
rs1498726	0.83[ASN][1000 genomes]
rs1534026	0.82[EUR][1000 genomes]
rs1534027	0.82[EUR][1000 genomes]
rs1534028	0.82[EUR][1000 genomes]
rs17694011	0.89[EUR][1000 genomes]
rs1814336	0.90[EUR][1000 genomes]
rs1814337	0.89[EUR][1000 genomes]
rs1863912	0.88[EUR][1000 genomes]
rs1863913	0.89[EUR][1000 genomes]
rs1874883	0.90[EUR][1000 genomes]
rs1880376	0.87[EUR][1000 genomes]
rs1880377	0.87[EUR][1000 genomes]
rs2177601	0.89[EUR][1000 genomes]
rs2177602	0.88[EUR][1000 genomes]
rs2241556	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2370578	0.90[EUR][1000 genomes]
rs2370641	0.89[EUR][1000 genomes]
rs2370642	0.90[EUR][1000 genomes]
rs2373865	0.83[EUR][1000 genomes]
rs28409322	0.86[EUR][1000 genomes]
rs28702610	0.83[EUR][1000 genomes]
rs2887797	0.90[EUR][1000 genomes]
rs35718987	0.83[EUR][1000 genomes]
rs35933983	0.86[EUR][1000 genomes]
rs36006513	0.83[EUR][1000 genomes]
rs3846055	0.90[EUR][1000 genomes]
rs3846056	0.89[EUR][1000 genomes]
rs3856729	0.90[EUR][1000 genomes]
rs3932818	0.89[EUR][1000 genomes]
rs4309773	0.82[EUR][1000 genomes]
rs4367113	0.82[EUR][1000 genomes]
rs4417907	0.83[EUR][1000 genomes]
rs4498009	0.91[EUR][1000 genomes]
rs4539979	0.82[EUR][1000 genomes]
rs4572812	0.81[EUR][1000 genomes]
rs4955555	0.82[EUR][1000 genomes]
rs4974478	0.85[EUR][1000 genomes]
rs4974480	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4974481	0.87[EUR][1000 genomes]
rs4974483	0.89[EUR][1000 genomes]
rs4974484	0.90[EUR][1000 genomes]
rs4974488	0.84[ASN][1000 genomes]
rs4974493	0.90[EUR][1000 genomes]
rs55913793	0.82[EUR][1000 genomes]
rs62269547	0.89[EUR][1000 genomes]
rs6439484	0.88[EUR][1000 genomes]
rs6439487	0.88[EUR][1000 genomes]
rs6763088	0.88[EUR][1000 genomes]
rs6763093	0.88[EUR][1000 genomes]
rs6765505	0.89[EUR][1000 genomes]
rs6766818	0.90[EUR][1000 genomes]
rs6766897	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6768323	0.87[EUR][1000 genomes]
rs6769885	0.82[EUR][1000 genomes]
rs6772406	0.89[EUR][1000 genomes]
rs6772896	0.90[EUR][1000 genomes]
rs6776203	0.88[EUR][1000 genomes]
rs6782128	0.82[EUR][1000 genomes]
rs6785027	0.89[EUR][1000 genomes]
rs6787371	0.87[EUR][1000 genomes]
rs6790338	0.90[EUR][1000 genomes]
rs6790466	0.89[EUR][1000 genomes]
rs6799110	0.89[EUR][1000 genomes]
rs6799543	0.89[EUR][1000 genomes]
rs6800862	0.89[EUR][1000 genomes]
rs6801596	0.86[EUR][1000 genomes]
rs6802654	0.89[EUR][1000 genomes]
rs6804770	0.88[EUR][1000 genomes]
rs6805388	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6806417	0.89[EUR][1000 genomes]
rs7356093	0.89[EUR][1000 genomes]
rs7371896	0.88[EUR][1000 genomes]
rs7373874	0.88[EUR][1000 genomes]
rs7374158	0.87[EUR][1000 genomes]
rs7374325	0.83[EUR][1000 genomes]
rs7427492	0.89[EUR][1000 genomes]
rs7428326	0.85[EUR][1000 genomes]
rs7429866	0.89[EUR][1000 genomes]
rs7432268	0.89[EUR][1000 genomes]
rs7433663	0.88[EUR][1000 genomes]
rs7611828	0.85[EUR][1000 genomes]
rs7619451	0.89[EUR][1000 genomes]
rs7627726	0.85[EUR][1000 genomes]
rs7630874	0.83[EUR][1000 genomes]
rs7637227	0.86[EUR][1000 genomes]
rs7648990	0.88[EUR][1000 genomes]
rs7649910	0.80[EUR][1000 genomes]
rs7650509	0.84[ASN][1000 genomes]
rs9289471	0.88[EUR][1000 genomes]
rs9289475	0.88[EUR][1000 genomes]
rs9289476	0.88[EUR][1000 genomes]
rs9289478	0.87[EUR][1000 genomes]
rs934093	0.91[EUR][1000 genomes]
rs9809619	0.82[EUR][1000 genomes]
rs9813774	0.89[EUR][1000 genomes]
rs9814567	0.90[EUR][1000 genomes]
rs9815297	0.89[EUR][1000 genomes]
rs9815894	0.82[EUR][1000 genomes]
rs9815983	0.89[EUR][1000 genomes]
rs9819532	0.82[EUR][1000 genomes]
rs9820150	0.89[EUR][1000 genomes]
rs9820425	0.89[EUR][1000 genomes]
rs9826496	0.89[EUR][1000 genomes]
rs9827672	0.84[EUR][1000 genomes]
rs9827987	0.83[EUR][1000 genomes]
rs9828815	0.86[EUR][1000 genomes]
rs9829092	0.89[EUR][1000 genomes]
rs9832785	0.90[EUR][1000 genomes]
rs9833753	0.89[EUR][1000 genomes]
rs9834755	0.89[EUR][1000 genomes]
rs9835204	0.88[EUR][1000 genomes]
rs9838834	0.89[EUR][1000 genomes]
rs9841180	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9841212	0.94[EUR][1000 genomes]
rs9844537	0.88[EUR][1000 genomes]
rs9850015	0.87[EUR][1000 genomes]
rs9854299	0.89[EUR][1000 genomes]
rs9855013	0.88[EUR][1000 genomes]
rs9863786	0.87[EUR][1000 genomes]
rs9869981	0.87[EUR][1000 genomes]
rs9870262	0.87[EUR][1000 genomes]
rs9871305	0.90[EUR][1000 genomes]
rs9876658	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9879993	0.83[ASN][1000 genomes]
rs9883753	0.87[EUR][1000 genomes]
rs9884031	0.88[EUR][1000 genomes]
rs9968172	0.88[EUR][1000 genomes]
rs9985341	0.87[EUR][1000 genomes]
rs9985356	0.87[EUR][1000 genomes]
rs9989967	0.88[EUR][1000 genomes]
rs9990351	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877510	chr3:134126150-134400448	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

mRNA abundance (count:22)

SNP	Gene	Cis/trans	Tissue	Source
rs10935113	CEP63	cis	Esophagus Muscularis	GTEx
rs10935113	ANAPC13	cis	Adipose Subcutaneous	GTEx
rs10935113	ANAPC13	cis	Nerve Tibial	GTEx
rs10935113	ANAPC13	cis	Stomach	GTEx
rs10935113	ANAPC13	cis	Esophagus Mucosa	GTEx
rs10935113	CEP63	Cis_1M	lymphoblastoid	RTeQTL
rs10935113	ANAPC13	cis	Artery Tibial	GTEx
rs10935113	ANAPC13	cis	Heart Left Ventricle	GTEx
rs10935113	CEP63	cis	Skin Sun Exposed Lower leg	GTEx
rs10935113	CEP63	cis	lung	GTEx
rs10935113	ANAPC13	cis	Muscle Skeletal	GTEx
rs10935113	CEP63	cis	Artery Tibial	GTEx
rs10935113	ANAPC13	cis	multi-tissue	Pritchard
rs10935113	ANAPC13	cis	Esophagus Muscularis	GTEx
rs10935113	CEP63	cis	Muscle Skeletal	GTEx
rs10935113	CEP63	cis	Esophagus Mucosa	GTEx
rs10935113	ANAPC13	Cis_1M	lymphoblastoid	RTeQTL
rs10935113	ANAPC13	cis	lung	GTEx
rs10935113	ANAPC13	cis	Thyroid	GTEx
rs10935113	CEP63	cis	Nerve Tibial	GTEx
rs10935113	ANAPC13	cis	Skin Sun Exposed Lower leg	GTEx
rs10935113	ANAPC13	cis	Artery Aorta	GTEx

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134166000-134181800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:134167200-134181800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:134168800-134176400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr3:134168800-134176600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr3:134168800-134176600	Weak transcription	Right Atrium	heart
6	chr3:134169000-134183600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr3:134169200-134178600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr3:134169200-134180400	Weak transcription	Fetal Muscle Trunk	muscle
9	chr3:134171000-134173800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr3:134171000-134175800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:134171000-134175800	Weak transcription	NHDF-Ad	bronchial
12	chr3:134171000-134178600	Weak transcription	Osteobl	bone
13	chr3:134171200-134176400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr3:134172400-134173200	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr3:134172600-134176600	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr3:134172600-134178200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr3:134172800-134173200	Enhancers	H1 Cell Line	embryonic stem cell
18	chr3:134172800-134176600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr3:134173000-134181200	Weak transcription	HUES48 Cell Line	embryonic stem cell

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