Variant report

Variant	rs4498009
Chromosome Location	chr3:134198008-134198009
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:134024950..134033700-chr3:134189216..134199294,13	MCF-7	breast:
2	chr3:134098337..134101094-chr3:134196289..134198473,2	MCF-7	breast:
3	chr3:134067954..134073453-chr3:134193720..134198538,5	MCF-7	breast:
4	chr3:134091802..134094314-chr3:134197014..134198811,2	MCF-7	breast:
5	chr3:134194842..134202002-chr3:134202428..134206148,8	K562	blood:
6	chr3:134026273..134028991-chr3:134194363..134198560,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000182923	Chromatin interaction
ENSG00000129055	Chromatin interaction
ENSG00000240006	Chromatin interaction
ENSG00000114019	Chromatin interaction
ENSG00000260633	Chromatin interaction
ENSG00000214289	Chromatin interaction

Extended variants
information (count: 223 )
Associated
traits (count: 27 )

rSNPs within LD-proxies of this variant (count:218)

rs_ID	r²[population]
rs10804632	0.85[ASN][1000 genomes]
rs10935113	0.91[EUR][1000 genomes]
rs10935120	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1138273	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11706117	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11708531	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11915964	0.91[CEU][hapmap];0.82[JPT][hapmap]
rs11919350	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11919458	0.87[ASN][1000 genomes]
rs11927068	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11928499	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12490835	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12492930	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12637301	0.84[CEU][hapmap]
rs12637751	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13059720	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13064209	0.82[CEU][hapmap];0.92[JPT][hapmap]
rs13065405	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13065773	0.80[AFR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13071551	0.81[ASN][1000 genomes]
rs13075117	0.81[CEU][hapmap];0.92[JPT][hapmap];0.92[YRI][hapmap]
rs13075253	0.82[CEU][hapmap];0.92[JPT][hapmap];0.92[YRI][hapmap]
rs13076825	0.81[CEU][hapmap];0.92[JPT][hapmap];0.96[YRI][hapmap]
rs13081177	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13081688	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13084192	0.82[CEU][hapmap];0.92[JPT][hapmap]
rs13087875	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13088413	0.82[ASN][1000 genomes]
rs13089566	0.92[CEU][hapmap]
rs13089966	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13096604	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13098546	0.82[CEU][hapmap];0.92[JPT][hapmap];0.85[YRI][hapmap]
rs13316205	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1357762	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1357764	0.92[CEU][hapmap];0.92[JPT][hapmap]
rs1498718	1.00[CEU][hapmap];0.93[CHB][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1534025	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.82[ASN][1000 genomes]
rs1534026	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1534027	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1534028	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1534030	0.83[CEU][hapmap]
rs17694011	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1814336	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1814337	0.96[CEU][hapmap];0.93[CHB][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1863911	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1863912	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1863913	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1874883	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1880375	0.85[CEU][hapmap]
rs1880376	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1880377	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1917130	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2056603	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2177601	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2177602	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2241556	1.00[CEU][hapmap];0.84[JPT][hapmap];0.93[EUR][1000 genomes]
rs2293293	0.88[CEU][hapmap]
rs2293294	0.84[CEU][hapmap];0.92[JPT][hapmap]
rs2370578	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2370641	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2370642	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2373865	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28409322	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28702610	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2887797	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2888670	0.84[CEU][hapmap]
rs34029813	0.85[EUR][1000 genomes]
rs35718987	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35933983	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs36006513	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3846055	0.81[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3846056	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3856729	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3932818	0.96[CEU][hapmap];0.86[CHB][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4074521	0.88[CEU][hapmap];0.91[JPT][hapmap]
rs4074522	0.88[CEU][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap]
rs4245903	0.88[CEU][hapmap]
rs4245905	0.81[CEU][hapmap]
rs4245907	0.92[CEU][hapmap];0.83[JPT][hapmap]
rs4306899	1.00[JPT][hapmap]
rs4309773	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4367113	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4417907	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4435682	0.92[CEU][hapmap];0.92[JPT][hapmap]
rs4539979	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4543053	0.80[CEU][hapmap]
rs4572812	0.80[AFR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4634170	0.84[CEU][hapmap];0.91[JPT][hapmap]
rs4955485	0.82[ASN][1000 genomes]
rs4955525	0.88[CEU][hapmap]
rs4955526	0.88[CEU][hapmap]
rs4955534	0.84[CEU][hapmap]
rs4955542	0.84[CEU][hapmap]
rs4955546	0.83[CEU][hapmap]
rs4955547	0.84[CEU][hapmap];0.91[JPT][hapmap]
rs4955548	0.92[JPT][hapmap]
rs4955555	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4974478	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4974480	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs4974481	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4974483	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4974484	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4974493	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55913793	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56899746	0.86[ASN][1000 genomes]
rs62269547	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62269560	0.82[ASN][1000 genomes]
rs6439484	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6439487	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6439492	0.84[EUR][1000 genomes]
rs6763088	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6763093	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6763188	0.92[CEU][hapmap]
rs6764764	0.84[CEU][hapmap];0.90[JPT][hapmap];0.92[YRI][hapmap]
rs6765505	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6766818	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6766897	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs6768323	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6769885	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6772406	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6772896	1.00[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6775611	0.91[CEU][hapmap]
rs6776203	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6779326	0.82[CEU][hapmap]
rs6782128	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6782563	0.82[ASN][1000 genomes]
rs6785027	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6787371	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6790338	0.91[CHB][hapmap];0.83[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6790466	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6793487	0.82[ASN][1000 genomes]
rs6799110	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6799543	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6800862	0.96[CEU][hapmap];0.93[CHB][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6801596	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6802654	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6804770	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6805388	0.96[CEU][hapmap];0.83[YRI][hapmap];0.90[EUR][1000 genomes]
rs6806417	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6806810	0.85[CEU][hapmap]
rs7356093	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7371896	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7372770	0.87[EUR][1000 genomes]
rs7373874	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7374158	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7374325	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7427492	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7428326	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7429866	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7430034	0.84[CEU][hapmap]
rs7432268	0.93[CHB][hapmap];0.90[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7433663	1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7611828	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7619451	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7623567	0.92[CEU][hapmap]
rs7626557	0.88[CEU][hapmap]
rs7627654	0.85[EUR][1000 genomes]
rs7627726	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7630874	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7637227	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7648990	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7649910	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7653807	0.91[CEU][hapmap];0.91[JPT][hapmap]
rs9289471	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9289475	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9289476	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9289478	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs934093	0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9809344	0.80[CEU][hapmap]
rs9809619	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9813774	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9814567	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9815297	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9815894	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9815983	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9819532	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9820150	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9820425	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9824185	0.85[CEU][hapmap]
rs9826496	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9827672	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9827987	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9828815	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9829092	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9832785	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9833753	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9834755	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9835204	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9836401	0.82[CEU][hapmap]
rs9838119	0.82[CEU][hapmap]
rs9838467	0.82[CEU][hapmap]
rs9838834	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9841180	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs9841212	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs9841371	0.88[CEU][hapmap]
rs9844537	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9847788	1.00[CEU][hapmap];0.85[YRI][hapmap]
rs9848254	0.82[CEU][hapmap]
rs9850015	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9851441	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs9854299	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9855013	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9857242	0.88[CEU][hapmap]
rs9857995	0.88[CEU][hapmap]
rs9863786	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9864346	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs9869981	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9870262	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9871226	0.81[CEU][hapmap]
rs9871305	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9876658	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs9883753	1.00[CEU][hapmap];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9884031	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9968172	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9985341	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9985356	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9989967	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9990351	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877510	chr3:134126150-134400448	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv877511	chr3:134174071-134358947	Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv877512	chr3:134174071-134372486	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv877513	chr3:134174071-134379752	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv877514	chr3:134191938-134372486	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

mRNA abundance (count:27)

SNP	Gene	Cis/trans	Tissue	Source
rs4498009	CEP63	cis	Nerve Tibial	GTEx
rs4498009	ANAPC13	cis	Adipose Subcutaneous	GTEx
rs4498009	ANAPC13	cis	Artery Tibial	GTEx
rs4498009	CEP63	cis	lung	GTEx
rs4498009	ANAPC13	cis	Thyroid	GTEx
rs4498009	ANAPC13	Cis_1M	lymphoblastoid	RTeQTL
rs4498009	ANAPC13	cis	normal skin	skin_eQTL
rs4498009	ANAPC13	cis	Esophagus Mucosa	GTEx
rs4498009	ANAPC13	cis	Skin Sun Exposed Lower leg	GTEx
rs4498009	CEP63	cis	Muscle Skeletal	GTEx
rs4498009	ANAPC13	cis	Heart Left Ventricle	GTEx
rs4498009	ANAPC13	cis	Whole Blood	GTEx
rs4498009	ANAPC13	cis	Esophagus Muscularis	GTEx
rs4498009	ANAPC13	cis	Artery Aorta	GTEx
rs4498009	CEP63	cis	lesional skin	skin_eQTL
rs4498009	ANAPC13	cis	uninvolved skin	skin_eQTL
rs4498009	ANAPC13	cis	Muscle Skeletal	GTEx
rs4498009	CEP63	cis	Artery Tibial	GTEx
rs4498009	CEP63	cis	Esophagus Mucosa	GTEx
rs4498009	CEP63	cis	Esophagus Muscularis	GTEx
rs4498009	ANAPC13	cis	Nerve Tibial	GTEx
rs4498009	ANAPC13	cis	lesional skin	skin_eQTL
rs4498009	ANAPC13	cis	Stomach	GTEx
rs4498009	CEP63	cis	Skin Sun Exposed Lower leg	GTEx
rs4498009	CEP63	Cis_1M	lymphoblastoid	RTeQTL
rs4498009	ANAPC13	cis	lung	GTEx
rs4498009	ANAPC13	cis	multi-tissue	Pritchard

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134182800-134199400	Weak transcription	Pancreas	Pancrea
2	chr3:134183800-134203600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:134184000-134199400	Weak transcription	Aorta	Aorta
4	chr3:134184000-134203000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr3:134190600-134199400	Weak transcription	Gastric	stomach
6	chr3:134190800-134203600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr3:134192000-134199200	Weak transcription	Lung	lung
8	chr3:134193000-134199400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr3:134193000-134202800	Weak transcription	Stomach Mucosa	stomach
10	chr3:134193000-134203400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr3:134193600-134198200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr3:134193600-134201400	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr3:134193600-134202200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr3:134193800-134198200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr3:134193800-134200800	Strong transcription	Primary neutrophils fromperipheralblood	blood
16	chr3:134193800-134201600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr3:134193800-134202400	Strong transcription	Fetal Intestine Large	intestine
18	chr3:134194200-134201600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr3:134194400-134201000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr3:134194400-134201600	Strong transcription	Primary B cells from cord blood	blood
21	chr3:134194400-134201600	Strong transcription	Primary T helper cells PMA-I stimulated	--
22	chr3:134194400-134201800	Strong transcription	Primary T helper cells fromperipheralblood	blood
23	chr3:134194400-134202000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr3:134194400-134202200	Strong transcription	Primary T cells from cord blood	blood
25	chr3:134194600-134198200	Strong transcription	Brain Germinal Matrix	brain
26	chr3:134194600-134198200	Strong transcription	Spleen	Spleen
27	chr3:134194600-134201400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr3:134194600-134201600	Strong transcription	Duodenum Smooth Muscle	Duodenum
29	chr3:134194600-134202000	Strong transcription	Rectal Mucosa Donor 31	rectum
30	chr3:134194600-134202200	Strong transcription	Fetal Thymus	thymus
31	chr3:134194600-134202800	Strong transcription	Fetal Muscle Trunk	muscle
32	chr3:134194800-134198200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr3:134194800-134198200	Strong transcription	Adipose Nuclei	Adipose
34	chr3:134194800-134201400	Strong transcription	Primary monocytes fromperipheralblood	blood
35	chr3:134194800-134201600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr3:134194800-134201600	Strong transcription	Fetal Brain Female	brain
37	chr3:134194800-134201600	Strong transcription	Dnd41	blood
38	chr3:134194800-134201800	Strong transcription	Primary B cells from peripheral blood	blood
39	chr3:134194800-134202000	Strong transcription	Primary T cells fromperipheralblood	blood
40	chr3:134195000-134198200	Strong transcription	ES-I3 Cell Line	embryonic stem cell
41	chr3:134195000-134201000	Strong transcription	Primary hematopoietic stem cells	blood
42	chr3:134195000-134201400	Strong transcription	GM12878-XiMat	blood
43	chr3:134195000-134201800	Strong transcription	HUES64 Cell Line	embryonic stem cell
44	chr3:134195000-134201800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr3:134195000-134202000	Strong transcription	Duodenum Mucosa	Duodenum
46	chr3:134195000-134202200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
47	chr3:134195000-134202200	Strong transcription	Sigmoid Colon	Sigmoid Colon
48	chr3:134195000-134202400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr3:134195000-134202400	Strong transcription	Rectal Mucosa Donor 29	rectum
50	chr3:134195200-134198200	Strong transcription	Primary T killer naive cells fromperipheralblood	blood

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Variant report

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