Variant report

Variant	rs2887797
Chromosome Location	chr3:134202506-134202507
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUN	chr3:134201951-134202616	HUVEC	blood vessel:	n/a	chr3:134202545-134202553 chr3:134202196-134202207
2	POLR2A	chr3:134201396-134207240	IMR90	lung:	n/a	n/a
3	POLR2A	chr3:134201717-134203000	HUVEC	blood vessel:	n/a	n/a
4	FOSL2	chr3:134201804-134202722	SK-N-SH	brain:	n/a	chr3:134202545-134202553 chr3:134202196-134202207
5	POLR2A	chr3:134201925-134202902	HUVEC	blood vessel:	n/a	n/a
6	POLR2A	chr3:134201839-134203025	HUVEC	blood vessel:	n/a	n/a
7	POLR2A	chr3:134201301-134203057	K562	blood:	n/a	n/a
8	POLR2A	chr3:134201670-134202960	HUVEC	blood vessel:	n/a	n/a
9	ZNF263	chr3:134202375-134202754	HEK293-T-REx	kidney:	n/a	n/a
10	FOS	chr3:134201990-134202625	MCF10A-Er-Src	breast:	n/a	chr3:134202545-134202553 chr3:134202196-134202207
11	POLR2A	chr3:134202025-134202674	ProgFib	skin:	n/a	n/a
12	STAT3	chr3:134201947-134202518	MCF10A-Er-Src	breast:	n/a	chr3:134202151-134202162
13	POLR2A	chr3:134201862-134202740	MCF10A-Er-Src	breast:	n/a	n/a
14	FOS	chr3:134201864-134202720	MCF10A-Er-Src	breast:	n/a	chr3:134202545-134202553 chr3:134202196-134202207
15	FOS	chr3:134202013-134202699	MCF10A-Er-Src	breast:	n/a	chr3:134202545-134202553 chr3:134202196-134202207
16	EP300	chr3:134201873-134202581	SK-N-SH	brain:	n/a	n/a
17	FOS	chr3:134201931-134202711	MCF10A-Er-Src	breast:	n/a	chr3:134202545-134202553 chr3:134202196-134202207
18	POLR2A	chr3:134201878-134202510	SK-N-SH	brain:	n/a	n/a
19	FOS	chr3:134201708-134202780	HUVEC	blood vessel:	n/a	chr3:134202545-134202553 chr3:134202196-134202207

No.	Distal block	Cell Line	Cell type
1	chr3:134066447..134072766-chr3:134202428..134206376,9	MCF-7	breast:
2	chr3:133969506..133971460-chr3:134202147..134204798,2	K562	blood:
3	chr3:134027625..134034860-chr3:134199305..134206618,11	MCF-7	breast:
4	chr3:134081380..134086335-chr3:134201546..134208103,7	MCF-7	breast:
5	chr3:134091805..134100491-chr3:134198620..134206897,15	MCF-7	breast:
6	chr3:134072948..134076764-chr3:134201781..134206077,4	MCF-7	breast:

Variant related genes	Relation type
ANAPC13	TF binding region
CEP63	TF binding region
ENSG00000260633	Chromatin interaction
ENSG00000163785	Chromatin interaction
ENSG00000240006	Chromatin interaction
ENSG00000114019	Chromatin interaction
ENSG00000214289	Chromatin interaction

Extended variants
information (count: 221 )
Associated
traits (count: 28 )

rSNPs within LD-proxies of this variant (count:214)

rs_ID	r²[population]
rs10804632	0.83[ASN][1000 genomes]
rs10935113	0.90[EUR][1000 genomes]
rs10935120	1.00[CEU][hapmap];0.93[CHB][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1138273	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11706117	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11708531	1.00[CEU][hapmap];0.93[CHB][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11915964	0.91[CEU][hapmap]
rs11919350	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11919458	0.84[ASN][1000 genomes]
rs11927068	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11928499	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12490835	0.96[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12492930	1.00[CEU][hapmap];0.93[CHB][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12637301	0.84[CEU][hapmap]
rs12637751	1.00[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13059720	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13064209	0.82[CEU][hapmap];0.83[JPT][hapmap]
rs13065405	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13065773	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13075117	0.81[CEU][hapmap];0.83[JPT][hapmap]
rs13075253	0.82[CEU][hapmap];0.83[JPT][hapmap]
rs13076825	0.81[CEU][hapmap];0.82[JPT][hapmap]
rs13081177	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13081688	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13084192	0.82[CEU][hapmap];0.83[JPT][hapmap]
rs13087875	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13088413	0.80[ASN][1000 genomes]
rs13089566	0.92[CEU][hapmap]
rs13089966	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13096604	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13098546	0.82[CEU][hapmap];0.83[JPT][hapmap]
rs13316205	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1357762	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1357764	0.92[CEU][hapmap];0.82[JPT][hapmap]
rs1498718	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1534025	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.80[ASN][1000 genomes]
rs1534026	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1534027	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1534028	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1534030	0.83[CEU][hapmap]
rs17694011	0.96[CEU][hapmap];0.93[CHB][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1814336	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1814337	0.96[CEU][hapmap];0.86[CHB][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1863911	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1863912	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1863913	1.00[CEU][hapmap];0.93[CHB][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1874883	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1880375	0.85[CEU][hapmap]
rs1880376	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1880377	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1917130	0.95[CEU][hapmap];0.92[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs2056603	1.00[CEU][hapmap];0.93[CHB][hapmap]
rs2177601	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2177602	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2241556	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2293293	0.88[CEU][hapmap]
rs2293294	0.84[CEU][hapmap];0.83[JPT][hapmap]
rs2370578	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2370641	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2370642	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2373865	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28409322	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28702610	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2888670	0.84[CEU][hapmap]
rs34029813	0.86[EUR][1000 genomes]
rs35718987	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35933983	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36006513	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3846055	0.83[CHB][hapmap];0.90[JPT][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3846056	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3856729	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3932818	0.96[CEU][hapmap];0.93[CHB][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4074521	0.88[CEU][hapmap];0.81[JPT][hapmap]
rs4074522	0.88[CEU][hapmap];0.81[JPT][hapmap]
rs4245903	0.88[CEU][hapmap]
rs4245905	0.81[CEU][hapmap]
rs4245907	0.92[CEU][hapmap]
rs4306899	0.91[JPT][hapmap]
rs4309773	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4367113	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4417907	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4435682	0.92[CEU][hapmap];0.83[JPT][hapmap]
rs4498009	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4539979	1.00[CEU][hapmap];0.93[CHB][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4543053	0.80[CEU][hapmap]
rs4572812	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4634170	0.84[CEU][hapmap];0.81[JPT][hapmap]
rs4955525	0.88[CEU][hapmap]
rs4955526	0.88[CEU][hapmap]
rs4955534	0.84[CEU][hapmap]
rs4955542	0.84[CEU][hapmap]
rs4955546	0.83[CEU][hapmap]
rs4955547	0.84[CEU][hapmap];0.81[JPT][hapmap]
rs4955548	0.83[JPT][hapmap]
rs4955555	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4974478	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4974480	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs4974481	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4974483	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4974484	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4974493	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55913793	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56899746	0.84[ASN][1000 genomes]
rs62269547	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62269560	0.80[ASN][1000 genomes]
rs6439484	1.00[CEU][hapmap];0.93[CHB][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6439487	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6439492	0.85[EUR][1000 genomes]
rs6763088	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6763093	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6763188	0.92[CEU][hapmap]
rs6764764	0.84[CEU][hapmap]
rs6765505	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6766818	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6766897	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs6768323	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6769885	0.96[CEU][hapmap];0.93[CHB][hapmap];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6772406	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6772896	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6775611	0.91[CEU][hapmap]
rs6776203	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6779326	0.82[CEU][hapmap]
rs6782128	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6785027	1.00[CEU][hapmap];0.93[CHB][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6787371	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6790338	1.00[CHB][hapmap];0.91[JPT][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6790466	0.83[CHB][hapmap];0.88[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6799110	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6799543	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6800862	0.96[CEU][hapmap];0.86[CHB][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6801596	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6802654	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6804770	1.00[CEU][hapmap];0.93[CHB][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6805388	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs6806417	1.00[CEU][hapmap];0.93[CHB][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6806810	0.85[CEU][hapmap]
rs7356093	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7371896	1.00[CEU][hapmap];0.93[CHB][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7372770	0.88[EUR][1000 genomes]
rs7373874	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7374158	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7374325	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7427492	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7428326	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7429866	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7430034	0.84[CEU][hapmap]
rs7432268	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7433663	0.92[CHB][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7611828	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7619451	1.00[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7623567	0.92[CEU][hapmap]
rs7626557	0.88[CEU][hapmap]
rs7627654	0.86[EUR][1000 genomes]
rs7627726	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7630874	1.00[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7637227	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7648990	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7649910	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7653807	0.91[CEU][hapmap];0.81[JPT][hapmap]
rs9289471	1.00[CEU][hapmap];0.93[CHB][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9289475	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9289476	1.00[CEU][hapmap];0.93[CHB][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9289478	1.00[CEU][hapmap];0.93[CHB][hapmap];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs934093	0.91[CEU][hapmap];0.93[CHB][hapmap];0.83[JPT][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9809344	0.80[CEU][hapmap]
rs9809619	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9813774	1.00[CEU][hapmap];0.93[CHB][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9814567	1.00[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9815297	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9815894	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9815983	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9819532	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9820150	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9820425	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9824185	0.85[CEU][hapmap]
rs9826496	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9827672	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9827987	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9828815	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9829092	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9832785	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9833753	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9834755	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9835204	1.00[CEU][hapmap];0.93[CHB][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9836401	0.82[CEU][hapmap]
rs9838119	0.82[CEU][hapmap]
rs9838467	0.82[CEU][hapmap]
rs9838834	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9841180	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs9841212	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs9841371	0.88[CEU][hapmap]
rs9844537	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9847788	1.00[CEU][hapmap]
rs9848254	0.82[CEU][hapmap]
rs9850015	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9851441	1.00[CEU][hapmap];0.93[CHB][hapmap]
rs9854299	1.00[CEU][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9855013	1.00[CEU][hapmap];0.93[CHB][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9857242	0.88[CEU][hapmap]
rs9857995	0.88[CEU][hapmap]
rs9863786	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9864346	1.00[CEU][hapmap];0.93[CHB][hapmap]
rs9869981	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9870262	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9871226	0.81[CEU][hapmap]
rs9871305	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9876658	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs9883753	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9884031	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9968172	1.00[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9985341	1.00[CEU][hapmap];0.93[CHB][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9985356	1.00[CEU][hapmap];0.93[CHB][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9989967	1.00[CEU][hapmap];0.93[CHB][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9990351	1.00[CEU][hapmap];0.93[CHB][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877510	chr3:134126150-134400448	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv877511	chr3:134174071-134358947	Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv877512	chr3:134174071-134372486	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv877513	chr3:134174071-134379752	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv877514	chr3:134191938-134372486	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv829730	chr3:134199097-134359544	Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
7	esv33705	chr3:134201034-134210747	Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

mRNA abundance (count:28)

SNP	Gene	Cis/trans	Tissue	Source
rs2887797	CEP63	cis	lung	GTEx
rs2887797	CEP63	cis	Artery Tibial	GTEx
rs2887797	ANAPC13	Cis_1M	lymphoblastoid	RTeQTL
rs2887797	ANAPC13	cis	Esophagus Mucosa	GTEx
rs2887797	ANAPC13	cis	Esophagus Muscularis	GTEx
rs2887797	ANAPC13	cis	Artery Aorta	GTEx
rs2887797	CEP63	cis	Nerve Tibial	GTEx
rs2887797	ANAPC13	cis	Nerve Tibial	GTEx
rs2887797	CEP63	cis	Muscle Skeletal	GTEx
rs2887797	ANAPC13	cis	Heart Left Ventricle	GTEx
rs2887797	ANAPC13	cis	Stomach	GTEx
rs2887797	ANAPC13	cis	uninvolved skin	skin_eQTL
rs2887797	ANAPC13	cis	normal skin	skin_eQTL
rs2887797	CEP63	Cis_1M	lymphoblastoid	RTeQTL
rs2887797	CEP63	cis	Whole Blood	GTEx
rs2887797	CEP63	cis	Esophagus Mucosa	GTEx
rs2887797	ANAPC13	cis	Whole Blood	GTEx
rs2887797	ANAPC13	cis	multi-tissue	Pritchard
rs2887797	ANAPC13	cis	Skin Sun Exposed Lower leg	GTEx
rs2887797	CEP63	cis	Esophagus Muscularis	GTEx
rs2887797	ANAPC13	cis	Muscle Skeletal	GTEx
rs2887797	CEP63	cis	lesional skin	skin_eQTL
rs2887797	ANAPC13	cis	lung	GTEx
rs2887797	ANAPC13	cis	Artery Tibial	GTEx
rs2887797	ANAPC13	cis	Adipose Subcutaneous	GTEx
rs2887797	CEP63	cis	Skin Sun Exposed Lower leg	GTEx
rs2887797	ANAPC13	cis	lesional skin	skin_eQTL
rs2887797	ANAPC13	cis	Thyroid	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134183800-134203600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr3:134184000-134203000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:134190800-134203600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr3:134193000-134202800	Weak transcription	Stomach Mucosa	stomach
5	chr3:134193000-134203400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr3:134194600-134202800	Strong transcription	Fetal Muscle Trunk	muscle
7	chr3:134195200-134202600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:134200000-134203400	Weak transcription	Right Atrium	heart
9	chr3:134200000-134203800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr3:134200200-134203600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:134200400-134202600	Weak transcription	Lung	lung
12	chr3:134200400-134202600	Weak transcription	Small Intestine	intestine
13	chr3:134200400-134203200	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr3:134200400-134203400	Weak transcription	Esophagus	oesophagus
15	chr3:134200600-134202600	Weak transcription	HepG2	liver
16	chr3:134200600-134202800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr3:134200600-134203400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr3:134201200-134202800	Genic enhancers	Fetal Lung	lung
19	chr3:134201200-134203600	Enhancers	Aorta	Aorta
20	chr3:134201400-134203000	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr3:134201400-134203000	Flanking Active TSS	NH-A	brain
22	chr3:134201400-134203200	Enhancers	NHLF	lung
23	chr3:134201400-134203400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr3:134201400-134203400	Weak transcription	Colonic Mucosa	Colon
25	chr3:134201400-134204400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr3:134201600-134202800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr3:134201600-134202800	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr3:134201600-134202800	Flanking Active TSS	HMEC	breast
29	chr3:134201600-134203200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr3:134201600-134203200	Enhancers	Liver	Liver
31	chr3:134201600-134203200	Genic enhancers	Fetal Stomach	stomach
32	chr3:134201600-134203400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr3:134201600-134203400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
34	chr3:134201600-134203400	Enhancers	Adipose Nuclei	Adipose
35	chr3:134201600-134203600	Enhancers	Primary monocytes fromperipheralblood	blood
36	chr3:134201800-134202600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
37	chr3:134201800-134202600	Weak transcription	Placenta	Placenta
38	chr3:134201800-134202600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
39	chr3:134201800-134202800	Weak transcription	Brain Anterior Caudate	brain
40	chr3:134201800-134202800	Enhancers	Duodenum Smooth Muscle	Duodenum
41	chr3:134201800-134202800	Weak transcription	Fetal Kidney	kidney
42	chr3:134201800-134202800	Weak transcription	Thymus	Thymus
43	chr3:134201800-134202800	Flanking Active TSS	HSMM	muscle
44	chr3:134201800-134203000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr3:134201800-134203000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
46	chr3:134201800-134203000	Flanking Active TSS	Osteobl	bone
47	chr3:134201800-134203200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr3:134201800-134203200	Enhancers	Brain Cingulate Gyrus	brain
49	chr3:134201800-134203200	Enhancers	Right Ventricle	heart
50	chr3:134201800-134203400	Weak transcription	H1 Cell Line	embryonic stem cell

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Variant report

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