Variant report

Variant	rs9809619
Chromosome Location	chr3:134280948-134280949
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 231 )
Associated
traits (count: 35 )

rSNPs within LD-proxies of this variant (count:224)

rs_ID	r²[population]
rs10804632	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10935113	0.82[EUR][1000 genomes]
rs10935120	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1138273	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11706117	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11708531	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11915964	0.91[CEU][hapmap];0.83[TSI][hapmap]
rs11919350	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11919458	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11927068	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11928499	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12490835	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12492930	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12637301	0.87[CEU][hapmap];0.93[JPT][hapmap]
rs12637751	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.93[MEX][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13059720	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13064209	0.84[CEU][hapmap]
rs13065405	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13065773	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13071551	0.82[ASN][1000 genomes]
rs13075117	0.83[CEU][hapmap]
rs13075253	0.84[CEU][hapmap]
rs13076825	0.83[CEU][hapmap]
rs13081177	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13081688	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13084192	0.84[CEU][hapmap]
rs13087875	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13088413	0.83[ASN][1000 genomes]
rs13089566	0.91[CEU][hapmap]
rs13089966	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13096604	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13098546	0.84[CEU][hapmap]
rs13316205	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13322305	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1357762	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1357764	0.91[CEU][hapmap]
rs1498718	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.93[MEX][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1534025	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs1534026	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1534027	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1534028	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1534030	0.83[CEU][hapmap];0.93[JPT][hapmap];0.86[MEX][hapmap]
rs17694011	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1814336	1.00[CEU][hapmap];0.93[CHB][hapmap];0.96[YRI][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1814337	0.95[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1863912	0.80[AFR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1863913	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1874883	0.94[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.84[CHD][hapmap];0.93[LWK][hapmap];0.81[MKK][hapmap];0.95[TSI][hapmap];0.85[YRI][hapmap];0.80[AFR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1880375	0.87[CEU][hapmap];0.93[JPT][hapmap]
rs1880376	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1880377	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1917130	0.95[CEU][hapmap];1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs2056603	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2056604	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2177601	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2177602	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2241556	0.88[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];0.85[MKK][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes]
rs2293293	0.88[CEU][hapmap];0.93[JPT][hapmap];0.93[MEX][hapmap];0.81[TSI][hapmap]
rs2293294	0.87[CEU][hapmap]
rs2370578	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2370641	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2370642	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2373865	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28409322	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28702610	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2887797	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2888670	0.87[CEU][hapmap];0.93[JPT][hapmap]
rs34029813	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35718987	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35933983	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs36006513	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3846055	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3846056	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3856729	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3932818	0.96[CEU][hapmap];0.86[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.93[MEX][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4074521	0.88[CEU][hapmap];0.85[MEX][hapmap]
rs4074522	0.88[CEU][hapmap]
rs4245903	0.88[CEU][hapmap];0.93[JPT][hapmap];0.93[MEX][hapmap];0.81[TSI][hapmap]
rs4245905	0.83[CEU][hapmap];0.93[JPT][hapmap]
rs4245907	0.91[CEU][hapmap]
rs4306899	0.82[CEU][hapmap]
rs4309773	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4367113	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4417907	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4435682	0.91[CEU][hapmap]
rs4437193	0.80[CEU][hapmap]
rs4456908	0.93[JPT][hapmap]
rs4498009	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4539979	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4543053	0.80[CEU][hapmap];0.81[MEX][hapmap]
rs4572812	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4634170	0.84[CEU][hapmap]
rs4955485	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4955525	0.88[CEU][hapmap];0.93[JPT][hapmap];0.93[MEX][hapmap];0.81[TSI][hapmap]
rs4955526	0.88[CEU][hapmap];0.93[JPT][hapmap];0.93[MEX][hapmap];0.81[TSI][hapmap]
rs4955534	0.87[CEU][hapmap];0.93[JPT][hapmap]
rs4955542	0.87[CEU][hapmap];0.91[JPT][hapmap]
rs4955546	0.82[CEU][hapmap];0.93[JPT][hapmap]
rs4955547	0.84[CEU][hapmap]
rs4955555	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4974478	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4974480	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs4974481	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4974483	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4974484	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4974493	0.86[AFR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55913793	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56899746	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62269547	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62269560	0.83[ASN][1000 genomes]
rs6439484	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6439487	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6439492	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6763088	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6763093	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6763188	0.91[CEU][hapmap]
rs6764764	0.84[CEU][hapmap]
rs6765505	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6766818	0.88[AFR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6766897	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs6768323	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6769885	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6772406	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6772896	0.82[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6775611	0.91[CEU][hapmap];0.83[TSI][hapmap]
rs6776203	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6779326	0.84[CEU][hapmap];0.93[JPT][hapmap]
rs6782128	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6782563	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6785027	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6787371	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6790338	0.91[CHB][hapmap];0.85[AFR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6790466	0.92[CHB][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6793487	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6799110	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6799543	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6800862	0.96[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6801596	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6802654	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6804770	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6805388	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs6806417	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6806810	0.88[CEU][hapmap];0.93[JPT][hapmap]
rs7356093	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7371896	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7372770	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7373874	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7374158	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7374325	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7427492	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7428326	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7429866	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7430034	0.83[CEU][hapmap];0.93[JPT][hapmap]
rs7432268	0.93[CHB][hapmap];0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7433663	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7433991	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7611611	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7611828	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7619451	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.93[MEX][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7623567	0.91[CEU][hapmap];0.91[JPT][hapmap]
rs7626557	0.91[CEU][hapmap];0.93[JPT][hapmap]
rs7627654	0.80[EUR][1000 genomes]
rs7627726	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7630874	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.93[MEX][hapmap];0.95[TSI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7637227	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7648616	0.92[JPT][hapmap]
rs7648990	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7649910	0.86[AFR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7653807	0.91[CEU][hapmap];0.83[TSI][hapmap]
rs9289471	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9289475	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9289476	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9289478	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs934093	0.87[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.87[LWK][hapmap];0.85[MEX][hapmap];0.81[MKK][hapmap];0.95[TSI][hapmap];0.89[YRI][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9756173	0.86[ASN][1000 genomes]
rs9809344	0.80[CEU][hapmap];0.93[JPT][hapmap];0.81[MEX][hapmap]
rs9813774	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9814567	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.85[MEX][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9815297	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9815894	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9815983	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9819532	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9820150	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9820425	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9824185	0.88[CEU][hapmap];0.93[JPT][hapmap]
rs9826496	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9827672	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9827987	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9828815	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9829092	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9832785	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9833753	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9834755	0.84[AFR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9835204	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9836401	0.84[CEU][hapmap];0.93[JPT][hapmap]
rs9838119	0.84[CEU][hapmap];0.93[JPT][hapmap]
rs9838467	0.84[CEU][hapmap];0.93[JPT][hapmap]
rs9838834	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9841180	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs9841212	1.00[CEU][hapmap];0.98[GIH][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes]
rs9841371	0.91[CEU][hapmap];0.93[JPT][hapmap]
rs9844537	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9847788	1.00[CEU][hapmap]
rs9848254	0.84[CEU][hapmap];0.93[JPT][hapmap]
rs9850015	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9851441	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9854299	1.00[CEU][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9855013	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9857242	0.88[CEU][hapmap];0.86[JPT][hapmap];0.86[MEX][hapmap];0.81[TSI][hapmap]
rs9857995	0.88[CEU][hapmap];0.93[JPT][hapmap];0.81[TSI][hapmap]
rs9863786	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9864346	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9869981	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9870262	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9871226	0.83[CEU][hapmap];0.93[JPT][hapmap]
rs9871305	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9876658	1.00[CEU][hapmap];0.82[GIH][hapmap];0.81[JPT][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes]
rs9883753	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9884031	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9968172	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.93[MEX][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9985341	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9985356	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9989967	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9990351	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877510	chr3:134126150-134400448	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv877511	chr3:134174071-134358947	Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv877512	chr3:134174071-134372486	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv877513	chr3:134174071-134379752	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv877514	chr3:134191938-134372486	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv829730	chr3:134199097-134359544	Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
7	nsv1002382	chr3:134239191-134358001	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:35)

SNP	Gene	Cis/trans	Tissue	Source
rs9809619	ANAPC13	cis	normal skin	skin_eQTL
rs9809619	ANAPC13	cis	Artery Tibial	GTEx
rs9809619	ANAPC13	cis	uninvolved skin	skin_eQTL
rs9809619	ANAPC13	cis	lymphoblastoid	seeQTL
rs9809619	TXNDC6	cis	cerebellum	SCAN
rs9809619	CEP63	cis	lesional skin	skin_eQTL
rs9809619	ANAPC13	cis	Thyroid	GTEx
rs9809619	ANAPC13	cis	Adipose Subcutaneous	GTEx
rs9809619	ANAPC13	cis	Heart Left Ventricle	GTEx
rs9809619	CEP63	cis	Nerve Tibial	GTEx
rs9809619	CEP63	cis	Esophagus Muscularis	GTEx
rs9809619	CEP63	Cis_1M	lymphoblastoid	RTeQTL
rs9809619	EPHB1	cis	cerebellum	SCAN
rs9809619	CEP63	cis	Muscle Skeletal	GTEx
rs9809619	CEP63	cis	Whole Blood	GTEx
rs9809619	ANAPC13	cis	Nerve Tibial	GTEx
rs9809619	ANAPC13	cis	Esophagus Mucosa	GTEx
rs9809619	ANAPC13	cis	Muscle Skeletal	GTEx
rs9809619	KY	cis	cerebellum	SCAN
rs9809619	ANAPC13	cis	cerebellum	SCAN
rs9809619	CEP63	cis	lung	GTEx
rs9809619	ANAPC13	cis	multi-tissue	Pritchard
rs9809619	ANAPC13	Cis_1M	lymphoblastoid	RTeQTL
rs9809619	ANAPC13	cis	Skin Sun Exposed Lower leg	GTEx
rs9809619	CEP63	cis	Artery Tibial	GTEx
rs9809619	ANAPC13	cis	Stomach	GTEx
rs9809619	ANAPC13	cis	Artery Aorta	GTEx
rs9809619	ANAPC13	cis	Whole Blood	GTEx
rs9809619	ANAPC13	cis	lesional skin	skin_eQTL
rs9809619	ANAPC13	cis	Esophagus Muscularis	GTEx
rs9809619	CEP63	cis	Esophagus Mucosa	GTEx
rs9809619	ANAPC13	cis	parietal	SCAN
rs9809619	ANAPC13	cis	lung	GTEx
rs9809619	CEP63	cis	parietal	SCAN
rs9809619	CEP63	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134246600-134281800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:134250400-134282000	Weak transcription	Stomach Mucosa	stomach
3	chr3:134256600-134287200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:134267800-134281200	Weak transcription	A549	lung
5	chr3:134269800-134281800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr3:134269800-134282800	Weak transcription	NHLF	lung
7	chr3:134269800-134286400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:134269800-134296600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr3:134270000-134282800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr3:134270000-134283000	Weak transcription	Small Intestine	intestine
11	chr3:134270000-134286000	Weak transcription	Psoas Muscle	Psoas
12	chr3:134270200-134281800	Weak transcription	NHEK	skin
13	chr3:134270400-134281000	Weak transcription	Fetal Kidney	kidney
14	chr3:134270600-134285200	Weak transcription	Brain Germinal Matrix	brain
15	chr3:134271200-134282600	Weak transcription	Rectal Smooth Muscle	rectum
16	chr3:134271200-134284800	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr3:134271400-134282600	Weak transcription	Lung	lung
18	chr3:134271400-134286400	Weak transcription	Spleen	Spleen
19	chr3:134271400-134287800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr3:134271800-134281800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr3:134272000-134289800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr3:134272200-134281800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr3:134272200-134287200	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr3:134272600-134282600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr3:134272600-134282800	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr3:134272600-134283200	Weak transcription	Colon Smooth Muscle	Colon
27	chr3:134272800-134281000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr3:134272800-134282000	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr3:134272800-134283400	Weak transcription	HUVEC	blood vessel
30	chr3:134272800-134284400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr3:134272800-134284800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr3:134272800-134285000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr3:134273000-134285600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr3:134275200-134281000	Strong transcription	Liver	Liver
35	chr3:134275200-134283400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr3:134275400-134281400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr3:134276000-134282000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr3:134276600-134283200	Strong transcription	Skeletal Muscle Female	skeletal muscle
39	chr3:134277200-134282200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr3:134277200-134283400	Strong transcription	Fetal Muscle Leg	muscle
41	chr3:134277200-134283400	Strong transcription	Left Ventricle	heart
42	chr3:134277400-134282200	Strong transcription	Fetal Thymus	thymus
43	chr3:134277400-134282400	Strong transcription	Primary T cells fromperipheralblood	blood
44	chr3:134277400-134283400	Strong transcription	Stomach Smooth Muscle	stomach
45	chr3:134277600-134281200	Strong transcription	Sigmoid Colon	Sigmoid Colon
46	chr3:134277600-134281600	Strong transcription	Fetal Intestine Large	intestine
47	chr3:134277600-134282000	Strong transcription	Primary B cells from peripheral blood	blood
48	chr3:134278000-134281000	Strong transcription	Primary T helper cells fromperipheralblood	blood
49	chr3:134278000-134281200	Strong transcription	Primary neutrophils fromperipheralblood	blood
50	chr3:134278400-134281000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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