Variant report

Variant	rs9835204
Chromosome Location	chr3:134261342-134261343
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr3:134261286-134261375	MCF-7	breast:	n/a	chr3:134261296-134261314
2	CTCF	chr3:134261220-134261370	GM12872	blood:	n/a	chr3:134261296-134261314
3	CTCF	chr3:134261269-134261396	MCF-7	breast:	n/a	chr3:134261296-134261314
4	CTCF	chr3:134261280-134261430	BE2_C	brain:	n/a	chr3:134261296-134261314
5	CTCF	chr3:134261240-134261390	NB4	blood:	n/a	chr3:134261296-134261314
6	CTCF	chr3:134261254-134261363	GM10266	blood:	n/a	chr3:134261296-134261314
7	CTCF	chr3:134261220-134261370	WERI-Rb-1	eye:	n/a	chr3:134261296-134261314
8	CTCF	chr3:134261323-134261350	MCF-7	breast:	n/a	n/a
9	CTCF	chr3:134261260-134261410	MCF-7	breast:	n/a	chr3:134261296-134261314
10	CTCF	chr3:134261240-134261390	HVMF	connective:	n/a	chr3:134261296-134261314

Variant related genes	Relation type
CEP63	TF binding region

Extended variants
information (count: 231 )
Associated
traits (count: 35 )

rSNPs within LD-proxies of this variant (count:224)

rs_ID	r²[population]
rs10804632	0.93[ASN][1000 genomes]
rs10935113	0.88[EUR][1000 genomes]
rs10935120	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1138273	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11706117	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11708531	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11915964	0.91[CEU][hapmap];0.85[TSI][hapmap]
rs11919350	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11919458	0.85[ASN][1000 genomes]
rs11927068	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11928499	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12490835	0.95[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12492930	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12637301	0.87[CEU][hapmap];0.93[JPT][hapmap]
rs12637751	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.93[MEX][hapmap];0.97[TSI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13059720	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13064209	0.84[CEU][hapmap]
rs13065405	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13065773	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13075117	0.83[CEU][hapmap]
rs13075253	0.84[CEU][hapmap]
rs13076825	0.83[CEU][hapmap]
rs13081177	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13081688	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13084192	0.84[CEU][hapmap]
rs13087875	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13088413	0.81[ASN][1000 genomes]
rs13089566	0.91[CEU][hapmap]
rs13089966	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13096604	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13098546	0.84[CEU][hapmap]
rs13316205	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13322305	0.84[ASN][1000 genomes]
rs1357762	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1357764	0.91[CEU][hapmap]
rs1498718	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1534025	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs1534026	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1534027	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1534028	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1534030	0.83[CEU][hapmap];0.93[JPT][hapmap];0.86[MEX][hapmap]
rs17694011	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1814336	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[YRI][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1814337	0.95[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1863911	0.81[EUR][1000 genomes]
rs1863912	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1863913	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1874883	0.94[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.84[CHD][hapmap];0.93[LWK][hapmap];0.84[MKK][hapmap];0.97[TSI][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1880375	0.87[CEU][hapmap];0.93[JPT][hapmap]
rs1880376	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1880377	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1917130	0.95[CEU][hapmap];1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs2056603	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2056604	0.84[ASN][1000 genomes]
rs2177601	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2177602	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2241556	0.88[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];0.88[MKK][hapmap];0.97[TSI][hapmap];0.91[EUR][1000 genomes]
rs2293293	0.88[CEU][hapmap];0.93[JPT][hapmap];0.93[MEX][hapmap];0.84[TSI][hapmap]
rs2293294	0.87[CEU][hapmap]
rs2370578	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2370641	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2370642	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2373865	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28409322	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28702610	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2887797	1.00[CEU][hapmap];0.93[CHB][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2888670	0.87[CEU][hapmap];0.93[JPT][hapmap]
rs34029813	0.84[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs35718987	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35933983	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36006513	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3846055	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3846056	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3856729	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3932818	0.96[CEU][hapmap];0.86[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4074521	0.88[CEU][hapmap];0.85[MEX][hapmap];0.81[TSI][hapmap]
rs4074522	0.88[CEU][hapmap];0.81[TSI][hapmap]
rs4245903	0.88[CEU][hapmap];0.93[JPT][hapmap];0.93[MEX][hapmap];0.83[TSI][hapmap]
rs4245905	0.83[CEU][hapmap];0.93[JPT][hapmap]
rs4245907	0.91[CEU][hapmap]
rs4306899	0.82[CEU][hapmap]
rs4309773	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4367113	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4417907	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4435682	0.91[CEU][hapmap]
rs4437193	0.80[CEU][hapmap]
rs4456908	0.93[JPT][hapmap]
rs4498009	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4539979	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4543053	0.80[CEU][hapmap];0.81[MEX][hapmap]
rs4572812	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4634170	0.84[CEU][hapmap]
rs4955485	0.90[ASN][1000 genomes]
rs4955525	0.88[CEU][hapmap];0.93[JPT][hapmap];0.93[MEX][hapmap];0.84[TSI][hapmap]
rs4955526	0.88[CEU][hapmap];0.93[JPT][hapmap];0.93[MEX][hapmap];0.84[TSI][hapmap]
rs4955534	0.87[CEU][hapmap];0.93[JPT][hapmap]
rs4955542	0.87[CEU][hapmap];0.91[JPT][hapmap]
rs4955546	0.82[CEU][hapmap];0.93[JPT][hapmap]
rs4955547	0.84[CEU][hapmap]
rs4955555	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4974478	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4974480	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs4974481	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4974483	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4974484	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4974493	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55913793	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56899746	0.85[ASN][1000 genomes]
rs62269547	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62269560	0.81[ASN][1000 genomes]
rs6439484	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6439487	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6439492	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6763088	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6763093	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6763188	0.91[CEU][hapmap]
rs6764764	0.84[CEU][hapmap]
rs6765505	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6766818	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6766897	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs6768323	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6769885	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6772406	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6772896	0.82[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];0.97[TSI][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6775611	0.91[CEU][hapmap];0.85[TSI][hapmap]
rs6776203	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6779326	0.84[CEU][hapmap];0.93[JPT][hapmap]
rs6782128	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6782563	0.90[ASN][1000 genomes]
rs6785027	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6787371	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6790338	0.91[CHB][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6790466	0.92[CHB][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6793487	0.90[ASN][1000 genomes]
rs6799110	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6799543	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6800862	0.96[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6801596	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6802654	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6804770	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6805388	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs6806417	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6806810	0.88[CEU][hapmap];0.93[JPT][hapmap]
rs7356093	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7371896	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7372770	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7373874	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7374158	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7374325	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7427492	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7428326	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7429866	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7430034	0.83[CEU][hapmap];0.93[JPT][hapmap]
rs7432268	0.93[CHB][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7433663	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7433991	0.84[ASN][1000 genomes]
rs7611611	0.84[ASN][1000 genomes]
rs7611828	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7619451	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.93[MEX][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7623567	0.91[CEU][hapmap];0.91[JPT][hapmap]
rs7626557	0.91[CEU][hapmap];0.93[JPT][hapmap]
rs7627654	0.86[EUR][1000 genomes]
rs7627726	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7630874	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.93[MEX][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7637227	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7648616	0.92[JPT][hapmap]
rs7648990	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7649910	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7653807	0.91[CEU][hapmap];0.85[TSI][hapmap]
rs9289471	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9289475	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9289476	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9289478	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs934093	0.87[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.87[LWK][hapmap];0.85[MEX][hapmap];0.84[MKK][hapmap];0.97[TSI][hapmap];0.85[YRI][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9756173	0.84[ASN][1000 genomes]
rs9809344	0.80[CEU][hapmap];0.93[JPT][hapmap];0.81[MEX][hapmap]
rs9809619	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9813774	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9814567	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.85[MEX][hapmap];0.97[TSI][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9815297	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9815894	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9815983	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9819532	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9820150	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9820425	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9824185	0.88[CEU][hapmap];0.93[JPT][hapmap]
rs9826496	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9827672	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9827987	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9828815	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9829092	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9832785	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9833753	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9834755	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9836401	0.84[CEU][hapmap];0.93[JPT][hapmap]
rs9838119	0.84[CEU][hapmap];0.93[JPT][hapmap]
rs9838467	0.84[CEU][hapmap];0.93[JPT][hapmap]
rs9838834	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9841180	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs9841212	1.00[CEU][hapmap];0.98[GIH][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes]
rs9841371	0.91[CEU][hapmap];0.93[JPT][hapmap]
rs9844537	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9847788	1.00[CEU][hapmap]
rs9848254	0.84[CEU][hapmap];0.93[JPT][hapmap]
rs9850015	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9851441	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs9854299	1.00[CEU][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9855013	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9857242	0.88[CEU][hapmap];0.86[JPT][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap]
rs9857995	0.88[CEU][hapmap];0.93[JPT][hapmap];0.83[TSI][hapmap]
rs9863786	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9864346	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs9869981	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9870262	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9871226	0.83[CEU][hapmap];0.93[JPT][hapmap]
rs9871305	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9876658	1.00[CEU][hapmap];0.82[GIH][hapmap];0.81[JPT][hapmap];0.97[TSI][hapmap];0.89[EUR][1000 genomes]
rs9883753	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9884031	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9968172	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.93[MEX][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9985341	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9985356	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9989967	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9990351	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877510	chr3:134126150-134400448	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv877511	chr3:134174071-134358947	Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv877512	chr3:134174071-134372486	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv877513	chr3:134174071-134379752	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv877514	chr3:134191938-134372486	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv829730	chr3:134199097-134359544	Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
7	nsv1002382	chr3:134239191-134358001	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:35)

SNP	Gene	Cis/trans	Tissue	Source
rs9835204	ANAPC13	cis	Heart Left Ventricle	GTEx
rs9835204	EPHB1	cis	cerebellum	SCAN
rs9835204	CEP63	cis	parietal	SCAN
rs9835204	ANAPC13	cis	Artery Tibial	GTEx
rs9835204	ANAPC13	Cis_1M	lymphoblastoid	RTeQTL
rs9835204	CEP63	cis	lung	GTEx
rs9835204	CEP63	Cis_1M	lymphoblastoid	RTeQTL
rs9835204	ANAPC13	cis	parietal	SCAN
rs9835204	ANAPC13	cis	Stomach	GTEx
rs9835204	ANAPC13	cis	Adipose Subcutaneous	GTEx
rs9835204	CEP63	cis	Esophagus Muscularis	GTEx
rs9835204	ANAPC13	cis	lymphoblastoid	seeQTL
rs9835204	ANAPC13	cis	cerebellum	SCAN
rs9835204	CEP63	cis	Skin Sun Exposed Lower leg	GTEx
rs9835204	ANAPC13	cis	Nerve Tibial	GTEx
rs9835204	ANAPC13	cis	uninvolved skin	skin_eQTL
rs9835204	TXNDC6	cis	cerebellum	SCAN
rs9835204	ANAPC13	cis	Skin Sun Exposed Lower leg	GTEx
rs9835204	CEP63	cis	Esophagus Mucosa	GTEx
rs9835204	ANAPC13	cis	Esophagus Mucosa	GTEx
rs9835204	CEP63	cis	Muscle Skeletal	GTEx
rs9835204	ANAPC13	cis	Muscle Skeletal	GTEx
rs9835204	KY	cis	cerebellum	SCAN
rs9835204	ANAPC13	cis	normal skin	skin_eQTL
rs9835204	ANAPC13	cis	lesional skin	skin_eQTL
rs9835204	CEP63	cis	Artery Tibial	GTEx
rs9835204	ANAPC13	cis	Esophagus Muscularis	GTEx
rs9835204	ANAPC13	cis	Whole Blood	GTEx
rs9835204	ANAPC13	cis	Artery Aorta	GTEx
rs9835204	ANAPC13	cis	multi-tissue	Pritchard
rs9835204	CEP63	cis	Whole Blood	GTEx
rs9835204	CEP63	cis	lesional skin	skin_eQTL
rs9835204	CEP63	cis	Nerve Tibial	GTEx
rs9835204	ANAPC13	cis	lung	GTEx
rs9835204	ANAPC13	cis	Thyroid	GTEx

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134236200-134267000	Weak transcription	HSMM	muscle
2	chr3:134244800-134269600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr3:134246200-134280800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:134246400-134265400	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr3:134246600-134269200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr3:134246600-134281800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr3:134249400-134265200	Weak transcription	Osteobl	bone
8	chr3:134249600-134268600	Weak transcription	Fetal Kidney	kidney
9	chr3:134249800-134265200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr3:134250400-134269400	Weak transcription	Psoas Muscle	Psoas
11	chr3:134250400-134269600	Weak transcription	HMEC	breast
12	chr3:134250400-134282000	Weak transcription	Stomach Mucosa	stomach
13	chr3:134250800-134265200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr3:134251000-134268400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr3:134252000-134265000	Weak transcription	HSMMtube	muscle
16	chr3:134252200-134265600	Weak transcription	Brain Angular Gyrus	brain
17	chr3:134252600-134266600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr3:134253200-134280000	Weak transcription	NH-A	brain
19	chr3:134254600-134265600	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr3:134254600-134266600	Weak transcription	NHLF	lung
21	chr3:134256400-134267400	Weak transcription	K562	blood
22	chr3:134256600-134264200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr3:134256600-134264600	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr3:134256600-134265200	Weak transcription	Fetal Brain Male	brain
25	chr3:134256600-134265200	Weak transcription	Ovary	ovary
26	chr3:134256600-134266800	Weak transcription	NHDF-Ad	bronchial
27	chr3:134256600-134269000	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr3:134256600-134269200	Weak transcription	Colonic Mucosa	Colon
29	chr3:134256600-134287200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr3:134256800-134264000	Weak transcription	Esophagus	oesophagus
31	chr3:134256800-134264200	Weak transcription	Colon Smooth Muscle	Colon
32	chr3:134256800-134264600	Weak transcription	GM12878-XiMat	blood
33	chr3:134256800-134265000	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr3:134256800-134265000	Weak transcription	Fetal Lung	lung
35	chr3:134256800-134265200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr3:134256800-134265200	Weak transcription	Gastric	stomach
37	chr3:134256800-134265200	Weak transcription	Lung	lung
38	chr3:134256800-134265200	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr3:134256800-134265400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr3:134256800-134265400	Weak transcription	Duodenum Mucosa	Duodenum
41	chr3:134256800-134265400	Weak transcription	Fetal Brain Female	brain
42	chr3:134256800-134265400	Weak transcription	NHEK	skin
43	chr3:134256800-134266600	Weak transcription	Small Intestine	intestine
44	chr3:134256800-134266800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr3:134256800-134268400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr3:134256800-134269000	Weak transcription	Spleen	Spleen
47	chr3:134256800-134269000	Weak transcription	HepG2	liver
48	chr3:134256800-134269200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr3:134256800-134269200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr3:134256800-134269200	Weak transcription	Aorta	Aorta

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