Variant report

Variant	rs934093
Chromosome Location	chr3:134195885-134195886
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:134024950..134033700-chr3:134189216..134199294,13	MCF-7	breast:
2	chr3:134087277..134089419-chr3:134195150..134197422,2	MCF-7	breast:
3	chr3:134067954..134073453-chr3:134193720..134198538,5	MCF-7	breast:
4	chr3:134184482..134185994-chr3:134195055..134196673,2	MCF-7	breast:
5	chr3:134032429..134034030-chr3:134195239..134197108,2	MCF-7	breast:
6	chr3:134076345..134078417-chr3:134195768..134197623,2	MCF-7	breast:
7	chr3:134194842..134202002-chr3:134202428..134206148,8	K562	blood:
8	chr3:134026273..134028991-chr3:134194363..134198560,4	MCF-7	breast:
9	chr3:134092105..134095063-chr3:134194966..134196485,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000114019	Chromatin interaction
ENSG00000240006	Chromatin interaction
ENSG00000129055	Chromatin interaction
ENSG00000260633	Chromatin interaction
ENSG00000182923	Chromatin interaction
ENSG00000214289	Chromatin interaction

Extended variants
information (count: 200 )
Associated
traits (count: 28 )

rSNPs within LD-proxies of this variant (count:193)

rs_ID	r²[population]
rs10804632	0.81[ASN][1000 genomes]
rs10935113	0.91[EUR][1000 genomes]
rs10935120	0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.85[MEX][hapmap];0.97[TSI][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1138273	0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11706117	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11708531	0.87[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.87[LWK][hapmap];0.85[MEX][hapmap];0.84[MKK][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11915964	0.83[CEU][hapmap];0.87[GIH][hapmap];0.88[TSI][hapmap]
rs11919350	0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11919458	0.83[ASN][1000 genomes]
rs11927068	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11928499	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12490835	0.86[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12492930	0.91[CEU][hapmap];1.00[CHB][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12637751	0.82[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13059720	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13064209	0.83[JPT][hapmap]
rs13065405	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13065773	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13075117	0.83[JPT][hapmap]
rs13075253	0.83[JPT][hapmap]
rs13076825	0.83[JPT][hapmap]
rs13081177	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13081688	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13084192	0.83[JPT][hapmap]
rs13087875	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13089566	0.83[CEU][hapmap]
rs13089966	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13096604	0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13098546	0.83[JPT][hapmap]
rs13316205	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1357762	0.91[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1357764	0.83[CEU][hapmap];0.83[JPT][hapmap]
rs1498718	0.91[CEU][hapmap];0.93[CHB][hapmap];0.91[CHD][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1534025	0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs1534026	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1534027	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1534028	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17694011	0.86[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1814336	0.95[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1814337	0.86[CEU][hapmap];0.93[CHB][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1863911	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1863912	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1863913	0.83[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.85[MEX][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1874883	0.94[ASW][hapmap];0.91[CEU][hapmap];0.86[CHB][hapmap];0.84[CHD][hapmap];0.97[GIH][hapmap];0.83[JPT][hapmap];0.85[LWK][hapmap];0.92[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1880376	0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1880377	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1917130	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2056603	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs2177601	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2177602	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2241556	0.87[ASW][hapmap];0.91[CEU][hapmap];0.85[MKK][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes]
rs2293293	0.81[TSI][hapmap]
rs2293294	0.83[JPT][hapmap]
rs2370578	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2370641	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2370642	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2373865	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28409322	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28702610	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2887797	0.91[CEU][hapmap];0.93[CHB][hapmap];0.83[JPT][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34029813	0.85[EUR][1000 genomes]
rs35718987	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35933983	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs36006513	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3846055	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3846056	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3856729	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3932818	0.87[CEU][hapmap];0.86[CHB][hapmap];0.87[CHD][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4074521	0.83[JPT][hapmap];0.85[MEX][hapmap];0.83[TSI][hapmap]
rs4074522	0.83[JPT][hapmap];0.92[MEX][hapmap];0.83[TSI][hapmap]
rs4245903	0.81[TSI][hapmap]
rs4245907	0.83[CEU][hapmap]
rs4306899	0.91[JPT][hapmap]
rs4309773	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4367113	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4417907	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4435682	0.83[CEU][hapmap];0.83[JPT][hapmap]
rs4498009	0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4539979	0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4572812	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4634170	0.83[JPT][hapmap]
rs4955525	0.81[TSI][hapmap]
rs4955526	0.81[TSI][hapmap]
rs4955547	0.83[JPT][hapmap]
rs4955548	0.83[JPT][hapmap]
rs4955555	0.87[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.85[LWK][hapmap];0.85[MEX][hapmap];0.86[MKK][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4974478	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4974480	0.91[CEU][hapmap];0.91[EUR][1000 genomes]
rs4974481	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4974483	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4974484	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4974493	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55913793	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56899746	0.83[ASN][1000 genomes]
rs62269547	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6439484	0.91[CEU][hapmap];1.00[CHB][hapmap];0.89[YRI][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6439487	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6439492	0.84[EUR][1000 genomes]
rs6763088	0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6763093	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6763188	0.82[CEU][hapmap]
rs6764764	0.82[JPT][hapmap]
rs6765505	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6766818	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6766897	0.91[CEU][hapmap];0.96[EUR][1000 genomes]
rs6768323	0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6769885	0.86[CEU][hapmap];1.00[CHB][hapmap];0.81[YRI][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6772406	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6772896	0.82[ASW][hapmap];0.91[CEU][hapmap];0.93[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6775611	0.83[CEU][hapmap];0.87[GIH][hapmap];0.88[TSI][hapmap]
rs6776203	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6782128	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6785027	0.87[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.87[LWK][hapmap];0.85[MEX][hapmap];0.84[MKK][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6787371	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6790338	0.91[CHB][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6790466	0.92[CHB][hapmap];0.87[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6799110	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6799543	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6800862	0.87[CEU][hapmap];0.93[CHB][hapmap];0.87[CHD][hapmap];0.93[TSI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6801596	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6802654	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6804770	0.91[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6805388	0.91[CEU][hapmap];0.90[EUR][1000 genomes]
rs6806417	0.87[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.87[LWK][hapmap];0.84[MKK][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7356093	0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7371896	0.91[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7372770	0.87[EUR][1000 genomes]
rs7373874	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7374158	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7374325	0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.89[YRI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7427492	0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.89[YRI][hapmap];0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7428326	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7429866	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7432268	0.93[CHB][hapmap];0.81[JPT][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7433663	1.00[CHB][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7611828	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7619451	0.82[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7623567	0.82[CEU][hapmap]
rs7626557	0.82[CEU][hapmap]
rs7627654	0.85[EUR][1000 genomes]
rs7627726	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7630874	0.82[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7637227	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7648990	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7649910	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7653807	0.83[CEU][hapmap];0.86[GIH][hapmap];0.83[JPT][hapmap];0.88[TSI][hapmap]
rs9289471	0.87[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.87[LWK][hapmap];0.85[MEX][hapmap];0.84[MKK][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9289475	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9289476	0.91[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9289478	0.91[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9809619	0.87[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.87[LWK][hapmap];0.85[MEX][hapmap];0.81[MKK][hapmap];0.95[TSI][hapmap];0.89[YRI][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9813774	0.91[CEU][hapmap];1.00[CHB][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9814567	0.82[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9815297	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9815894	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9815983	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9819532	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9820150	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9820425	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9826496	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9827672	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9827987	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9828815	0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9829092	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9832785	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9833753	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9834755	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9835204	0.87[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.87[LWK][hapmap];0.85[MEX][hapmap];0.84[MKK][hapmap];0.97[TSI][hapmap];0.85[YRI][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9838834	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9841180	0.91[CEU][hapmap];0.94[EUR][1000 genomes]
rs9841212	0.91[CEU][hapmap];0.97[TSI][hapmap];0.95[EUR][1000 genomes]
rs9841371	0.82[CEU][hapmap]
rs9844537	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9847788	0.91[CEU][hapmap]
rs9850015	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9851441	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs9854299	0.91[CEU][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9855013	0.91[CEU][hapmap];1.00[CHB][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9857242	0.81[TSI][hapmap]
rs9857995	0.81[TSI][hapmap]
rs9863786	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9864346	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs9869981	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9870262	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9871305	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9876658	0.91[CEU][hapmap];0.97[TSI][hapmap];0.91[EUR][1000 genomes]
rs9883753	0.90[CEU][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9884031	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9968172	0.82[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9985341	0.91[CEU][hapmap];1.00[CHB][hapmap];0.88[YRI][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9985356	0.82[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.85[MEX][hapmap];0.92[TSI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9989967	0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.85[MEX][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9990351	0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.85[MEX][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877510	chr3:134126150-134400448	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv877511	chr3:134174071-134358947	Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv877512	chr3:134174071-134372486	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv877513	chr3:134174071-134379752	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv460858	chr3:134191938-134195885	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
6	nsv591828	chr3:134191938-134195885	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
7	nsv877514	chr3:134191938-134372486	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

mRNA abundance (count:28)

SNP	Gene	Cis/trans	Tissue	Source
rs934093	ANAPC13	cis	Whole Blood	GTEx
rs934093	CEP63	cis	Esophagus Muscularis	GTEx
rs934093	ANAPC13	cis	lung	GTEx
rs934093	ANAPC13	Cis_1M	lymphoblastoid	RTeQTL
rs934093	ANAPC13	cis	Skin Sun Exposed Lower leg	GTEx
rs934093	CEP63	cis	Whole Blood	GTEx
rs934093	CEP63	cis	Esophagus Mucosa	GTEx
rs934093	CEP63	cis	Nerve Tibial	GTEx
rs934093	CEP63	cis	Muscle Skeletal	GTEx
rs934093	ANAPC13	cis	Heart Left Ventricle	GTEx
rs934093	ANAPC13	cis	Artery Aorta	GTEx
rs934093	ANAPC13	cis	Muscle Skeletal	GTEx
rs934093	ANAPC13	cis	Esophagus Mucosa	GTEx
rs934093	ANAPC13	cis	normal skin	skin_eQTL
rs934093	ANAPC13	cis	multi-tissue	Pritchard
rs934093	CEP63	cis	lung	GTEx
rs934093	CEP63	Cis_1M	lymphoblastoid	RTeQTL
rs934093	ANAPC13	cis	lesional skin	skin_eQTL
rs934093	CEP63	cis	Skin Sun Exposed Lower leg	GTEx
rs934093	ANAPC13	cis	Nerve Tibial	GTEx
rs934093	CEP63	cis	lesional skin	skin_eQTL
rs934093	ANAPC13	cis	Thyroid	GTEx
rs934093	ANAPC13	cis	Esophagus Muscularis	GTEx
rs934093	ANAPC13	cis	Artery Tibial	GTEx
rs934093	CEP63	cis	Artery Tibial	GTEx
rs934093	ANAPC13	cis	Stomach	GTEx
rs934093	ANAPC13	cis	Adipose Subcutaneous	GTEx
rs934093	ANAPC13	cis	uninvolved skin	skin_eQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134182800-134199400	Weak transcription	Pancreas	Pancrea
2	chr3:134183800-134203600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:134184000-134197000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr3:134184000-134197000	Weak transcription	Ovary	ovary
5	chr3:134184000-134199400	Weak transcription	Aorta	Aorta
6	chr3:134184000-134203000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr3:134186000-134197000	Weak transcription	Fetal Brain Male	brain
8	chr3:134190600-134199400	Weak transcription	Gastric	stomach
9	chr3:134190800-134203600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr3:134191400-134196600	Weak transcription	K562	blood
11	chr3:134191600-134197800	Weak transcription	Right Ventricle	heart
12	chr3:134191800-134196800	Weak transcription	A549	lung
13	chr3:134192000-134197400	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr3:134192000-134199200	Weak transcription	Lung	lung
15	chr3:134193000-134196600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr3:134193000-134196800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr3:134193000-134199400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr3:134193000-134202800	Weak transcription	Stomach Mucosa	stomach
19	chr3:134193000-134203400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr3:134193200-134196400	Enhancers	HMEC	breast
21	chr3:134193600-134196400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr3:134193600-134198200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr3:134193600-134201400	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr3:134193600-134202200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr3:134193800-134196200	Strong transcription	Fetal Intestine Small	intestine
26	chr3:134193800-134198200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr3:134193800-134200800	Strong transcription	Primary neutrophils fromperipheralblood	blood
28	chr3:134193800-134201600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr3:134193800-134202400	Strong transcription	Fetal Intestine Large	intestine
30	chr3:134194200-134196000	Strong transcription	Fetal Stomach	stomach
31	chr3:134194200-134201600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr3:134194400-134196000	Enhancers	Esophagus	oesophagus
33	chr3:134194400-134196400	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr3:134194400-134196600	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr3:134194400-134196800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr3:134194400-134198000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr3:134194400-134201000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
38	chr3:134194400-134201600	Strong transcription	Primary B cells from cord blood	blood
39	chr3:134194400-134201600	Strong transcription	Primary T helper cells PMA-I stimulated	--
40	chr3:134194400-134201800	Strong transcription	Primary T helper cells fromperipheralblood	blood
41	chr3:134194400-134202000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr3:134194400-134202200	Strong transcription	Primary T cells from cord blood	blood
43	chr3:134194600-134196000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr3:134194600-134197600	Genic enhancers	NHEK	skin
45	chr3:134194600-134198000	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr3:134194600-134198200	Strong transcription	Brain Germinal Matrix	brain
47	chr3:134194600-134198200	Strong transcription	Spleen	Spleen
48	chr3:134194600-134201400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr3:134194600-134201600	Strong transcription	Duodenum Smooth Muscle	Duodenum
50	chr3:134194600-134202000	Strong transcription	Rectal Mucosa Donor 31	rectum

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