Variant report

Variant	rs9289476
Chromosome Location	chr3:134237103-134237104
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:134204916..134206798-chr3:134235908..134238366,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000182923	Chromatin interaction
ENSG00000129055	Chromatin interaction

Extended variants
information (count: 228 )
Associated
traits (count: 27 )

rSNPs within LD-proxies of this variant (count:222)

rs_ID	r²[population]
rs10804632	0.93[ASN][1000 genomes]
rs10935113	0.88[EUR][1000 genomes]
rs10935120	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1138273	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11706117	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11708531	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11915964	0.91[CEU][hapmap]
rs11919350	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11919458	0.85[ASN][1000 genomes]
rs11927068	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11928499	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12490835	0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12492930	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12637301	0.84[CEU][hapmap];0.93[JPT][hapmap];0.81[YRI][hapmap]
rs12637751	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13059720	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13064209	0.82[CEU][hapmap]
rs13065405	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13065773	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13075117	0.81[CEU][hapmap]
rs13075253	0.82[CEU][hapmap]
rs13076825	0.81[CEU][hapmap]
rs13081177	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13081688	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13084192	0.82[CEU][hapmap]
rs13087875	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13088413	0.81[ASN][1000 genomes]
rs13089566	0.92[CEU][hapmap]
rs13089966	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13096604	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13098546	0.82[CEU][hapmap]
rs13316205	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13322305	0.84[ASN][1000 genomes]
rs1357762	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1357764	0.92[CEU][hapmap]
rs1498718	1.00[CEU][hapmap];0.92[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1534025	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs1534026	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1534027	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1534028	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1534030	0.83[CEU][hapmap];0.93[JPT][hapmap]
rs17694011	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1814336	1.00[CEU][hapmap];0.93[CHB][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1814337	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1863911	0.81[EUR][1000 genomes]
rs1863912	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1863913	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1874883	1.00[CEU][hapmap];0.85[CHB][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1880375	0.85[CEU][hapmap];0.93[JPT][hapmap];0.82[YRI][hapmap]
rs1880376	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1880377	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1917130	0.95[CEU][hapmap];1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs2056603	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[ASN][1000 genomes]
rs2056604	0.84[ASN][1000 genomes]
rs2177601	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2177602	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2241556	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2293293	0.88[CEU][hapmap];0.93[JPT][hapmap];0.83[YRI][hapmap]
rs2293294	0.84[CEU][hapmap]
rs2370578	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2370641	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2370642	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2373865	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28409322	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28702610	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2887797	1.00[CEU][hapmap];0.93[CHB][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2888670	0.84[CEU][hapmap];0.93[JPT][hapmap];0.82[YRI][hapmap]
rs34029813	0.87[EUR][1000 genomes]
rs35718987	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35933983	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36006513	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3846055	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3846056	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3856729	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3932818	0.96[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4074521	0.88[CEU][hapmap]
rs4074522	0.88[CEU][hapmap]
rs4245903	0.88[CEU][hapmap];0.93[JPT][hapmap]
rs4245905	0.81[CEU][hapmap];0.93[JPT][hapmap]
rs4245907	0.92[CEU][hapmap]
rs4309773	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4367113	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4417907	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4435682	0.92[CEU][hapmap]
rs4456908	0.93[JPT][hapmap]
rs4498009	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4539979	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4543053	0.80[CEU][hapmap]
rs4572812	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4634170	0.84[CEU][hapmap]
rs4955485	0.90[ASN][1000 genomes]
rs4955525	0.88[CEU][hapmap];0.93[JPT][hapmap];0.81[YRI][hapmap]
rs4955526	0.88[CEU][hapmap];0.93[JPT][hapmap];0.82[YRI][hapmap]
rs4955534	0.84[CEU][hapmap];0.93[JPT][hapmap];0.82[YRI][hapmap]
rs4955542	0.84[CEU][hapmap];0.92[JPT][hapmap];0.86[YRI][hapmap]
rs4955546	0.83[CEU][hapmap];0.93[JPT][hapmap]
rs4955547	0.84[CEU][hapmap]
rs4955555	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4974478	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4974480	0.96[CEU][hapmap];0.88[YRI][hapmap];0.89[EUR][1000 genomes]
rs4974481	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4974483	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4974484	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4974493	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55913793	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56899746	0.85[ASN][1000 genomes]
rs62269547	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62269560	0.81[ASN][1000 genomes]
rs6439484	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6439487	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6439492	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6763088	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6763093	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6763188	0.92[CEU][hapmap]
rs6764764	0.84[CEU][hapmap]
rs6765505	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6766818	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6766897	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs6768323	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6769885	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6772406	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6772896	1.00[CEU][hapmap];0.92[CHB][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6775611	0.91[CEU][hapmap]
rs6776203	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6779326	0.82[CEU][hapmap];0.93[JPT][hapmap]
rs6782128	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6782563	0.90[ASN][1000 genomes]
rs6785027	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6787371	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6790338	0.90[CHB][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6790466	0.92[CHB][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6793487	0.90[ASN][1000 genomes]
rs6799110	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6799543	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6800862	0.96[CEU][hapmap];0.93[CHB][hapmap];0.82[JPT][hapmap];0.89[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6801596	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6802654	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6804770	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6805388	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs6806417	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6806810	0.85[CEU][hapmap];0.93[JPT][hapmap];0.81[YRI][hapmap]
rs7356093	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7371896	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7372770	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7373874	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7374158	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7374325	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7427492	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7428326	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7429866	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7430034	0.84[CEU][hapmap];0.93[JPT][hapmap]
rs7432268	0.93[CHB][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7433663	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7433991	0.84[ASN][1000 genomes]
rs7611611	0.84[ASN][1000 genomes]
rs7611828	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7619451	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7623567	0.92[CEU][hapmap];0.92[JPT][hapmap]
rs7626557	0.88[CEU][hapmap];0.93[JPT][hapmap];0.81[YRI][hapmap]
rs7627654	0.86[EUR][1000 genomes]
rs7627726	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7630874	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7637227	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7648616	0.93[JPT][hapmap];0.86[YRI][hapmap]
rs7648990	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7649910	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7653807	0.91[CEU][hapmap]
rs9289471	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9289475	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9289478	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs934093	0.91[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9756173	0.84[ASN][1000 genomes]
rs9809344	0.80[CEU][hapmap];0.93[JPT][hapmap]
rs9809619	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9813774	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9814567	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9815297	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9815894	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9815983	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9819532	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9820150	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9820425	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9824185	0.85[CEU][hapmap];0.93[JPT][hapmap];0.82[YRI][hapmap]
rs9826496	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9827672	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9827987	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9828815	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9829092	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9832785	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9833753	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9834755	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9835204	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9836401	0.82[CEU][hapmap];0.93[JPT][hapmap]
rs9838119	0.82[CEU][hapmap];0.93[JPT][hapmap]
rs9838467	0.82[CEU][hapmap];0.93[JPT][hapmap]
rs9838834	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9841180	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs9841212	1.00[CEU][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs9841371	0.88[CEU][hapmap];0.93[JPT][hapmap];0.81[YRI][hapmap]
rs9844537	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9847788	1.00[CEU][hapmap]
rs9848254	0.82[CEU][hapmap];0.93[JPT][hapmap]
rs9850015	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9851441	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.84[ASN][1000 genomes]
rs9854299	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9855013	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9857242	0.88[CEU][hapmap];0.86[JPT][hapmap];0.83[YRI][hapmap]
rs9857995	0.88[CEU][hapmap];0.93[JPT][hapmap];0.80[YRI][hapmap]
rs9863786	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9864346	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[ASN][1000 genomes]
rs9869981	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9870262	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9871226	0.81[CEU][hapmap];0.93[JPT][hapmap]
rs9871305	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9876658	1.00[CEU][hapmap];0.81[JPT][hapmap];0.90[YRI][hapmap];0.89[EUR][1000 genomes]
rs9883753	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9884031	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9968172	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9985341	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9985356	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9989967	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9990351	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877510	chr3:134126150-134400448	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv877511	chr3:134174071-134358947	Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv877512	chr3:134174071-134372486	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv877513	chr3:134174071-134379752	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv877514	chr3:134191938-134372486	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv829730	chr3:134199097-134359544	Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

mRNA abundance (count:27)

SNP	Gene	Cis/trans	Tissue	Source
rs9289476	ANAPC13	cis	Nerve Tibial	GTEx
rs9289476	ANAPC13	Cis_1M	lymphoblastoid	RTeQTL
rs9289476	ANAPC13	cis	Heart Left Ventricle	GTEx
rs9289476	CEP63	cis	lesional skin	skin_eQTL
rs9289476	CEP63	cis	Esophagus Mucosa	GTEx
rs9289476	ANAPC13	cis	Stomach	GTEx
rs9289476	ANAPC13	cis	Muscle Skeletal	GTEx
rs9289476	CEP63	Cis_1M	lymphoblastoid	RTeQTL
rs9289476	CEP63	cis	Whole Blood	GTEx
rs9289476	ANAPC13	cis	lung	GTEx
rs9289476	ANAPC13	cis	multi-tissue	Pritchard
rs9289476	CEP63	cis	Skin Sun Exposed Lower leg	GTEx
rs9289476	CEP63	cis	Esophagus Muscularis	GTEx
rs9289476	ANAPC13	cis	uninvolved skin	skin_eQTL
rs9289476	ANAPC13	cis	Artery Aorta	GTEx
rs9289476	CEP63	cis	Nerve Tibial	GTEx
rs9289476	ANAPC13	cis	Esophagus Muscularis	GTEx
rs9289476	ANAPC13	cis	Thyroid	GTEx
rs9289476	ANAPC13	cis	Esophagus Mucosa	GTEx
rs9289476	ANAPC13	cis	Adipose Subcutaneous	GTEx
rs9289476	ANAPC13	cis	Skin Sun Exposed Lower leg	GTEx
rs9289476	ANAPC13	cis	normal skin	skin_eQTL
rs9289476	CEP63	cis	Artery Tibial	GTEx
rs9289476	ANAPC13	cis	lesional skin	skin_eQTL
rs9289476	ANAPC13	cis	Artery Tibial	GTEx
rs9289476	CEP63	cis	lung	GTEx
rs9289476	CEP63	cis	Muscle Skeletal	GTEx

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134206400-134241200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr3:134206600-134251600	Weak transcription	Colonic Mucosa	Colon
3	chr3:134207000-134241600	Weak transcription	Psoas Muscle	Psoas
4	chr3:134213800-134246000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr3:134215800-134242200	Weak transcription	NHEK	skin
6	chr3:134222000-134245800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr3:134223600-134240800	Weak transcription	Colon Smooth Muscle	Colon
8	chr3:134224400-134237600	Weak transcription	Fetal Brain Female	brain
9	chr3:134224600-134237600	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr3:134224800-134238800	Weak transcription	Brain Cingulate Gyrus	brain
11	chr3:134224800-134241200	Weak transcription	Brain Germinal Matrix	brain
12	chr3:134224800-134245800	Weak transcription	Pancreas	Pancrea
13	chr3:134225000-134237600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr3:134225000-134255800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr3:134225200-134241200	Weak transcription	Fetal Kidney	kidney
16	chr3:134225200-134256200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr3:134226400-134241400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr3:134226600-134238800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr3:134230200-134237400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr3:134230200-134241200	Weak transcription	Duodenum Mucosa	Duodenum
21	chr3:134230400-134240800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr3:134230600-134238400	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr3:134230600-134238800	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr3:134230800-134237400	Weak transcription	Fetal Stomach	stomach
25	chr3:134230800-134237800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr3:134230800-134238000	Weak transcription	Fetal Intestine Small	intestine
27	chr3:134230800-134238800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr3:134230800-134242000	Weak transcription	Left Ventricle	heart
29	chr3:134230800-134251800	Weak transcription	Aorta	Aorta
30	chr3:134230800-134256000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr3:134231000-134238200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr3:134231000-134238800	Weak transcription	Brain Hippocampus Middle	brain
33	chr3:134231200-134237800	Weak transcription	GM12878-XiMat	blood
34	chr3:134231200-134238600	Weak transcription	Fetal Lung	lung
35	chr3:134231200-134240800	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr3:134231200-134240800	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr3:134231200-134241400	Weak transcription	Ovary	ovary
38	chr3:134231200-134242200	Weak transcription	Thymus	Thymus
39	chr3:134231200-134255800	Weak transcription	Placenta	Placenta
40	chr3:134231400-134240800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr3:134231600-134242200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr3:134232600-134237200	Weak transcription	Fetal Muscle Leg	muscle
43	chr3:134232600-134237800	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr3:134232600-134246000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr3:134232800-134237200	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr3:134232800-134238000	Weak transcription	Fetal Thymus	thymus
47	chr3:134232800-134241400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr3:134234000-134238000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr3:134234600-134238600	Weak transcription	Primary B cells from cord blood	blood
50	chr3:134234600-134241000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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