Variant report

Variant	rs4074522
Chromosome Location	chr3:134325626-134325627
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 175 )
Associated
traits (count: 31 )

rSNPs within LD-proxies of this variant (count:168)

rs_ID	r²[population]
rs10804632	0.87[EUR][1000 genomes]
rs10935120	0.88[CEU][hapmap];0.81[TSI][hapmap]
rs10935123	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1138273	0.88[CEU][hapmap];0.91[JPT][hapmap];0.81[YRI][hapmap]
rs11708531	0.88[CEU][hapmap];0.81[TSI][hapmap]
rs11915964	0.88[CHD][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11919350	0.88[CEU][hapmap];0.91[JPT][hapmap];0.96[YRI][hapmap]
rs11919458	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11927539	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11927540	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12490835	0.86[CEU][hapmap];0.91[JPT][hapmap]
rs12492930	0.88[CEU][hapmap]
rs12637301	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12637751	0.88[ASW][hapmap];0.88[CEU][hapmap];0.80[GIH][hapmap];0.91[JPT][hapmap];1.00[LWK][hapmap];0.84[MEX][hapmap];0.96[MKK][hapmap];0.83[TSI][hapmap];0.96[YRI][hapmap]
rs13064209	0.96[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13071551	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13075117	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13075253	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13076825	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13084192	0.96[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13088413	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13089566	0.82[EUR][1000 genomes]
rs13096604	0.88[CEU][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs13098546	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13322305	0.88[EUR][1000 genomes]
rs1357762	0.87[CEU][hapmap]
rs1357764	1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1404289	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1498718	0.88[CEU][hapmap];0.81[TSI][hapmap]
rs1534025	0.87[CEU][hapmap];0.91[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1534029	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1534030	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.95[GIH][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17694011	0.82[CEU][hapmap]
rs1814336	0.90[CEU][hapmap];0.90[JPT][hapmap]
rs1814337	0.82[CEU][hapmap]
rs1863913	0.88[CEU][hapmap];0.81[TSI][hapmap]
rs1874883	0.88[CEU][hapmap];0.80[GIH][hapmap];0.81[JPT][hapmap];0.92[MEX][hapmap];0.83[TSI][hapmap]
rs1880374	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1880375	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1880376	0.88[CEU][hapmap];0.91[JPT][hapmap];0.96[YRI][hapmap]
rs1880378	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1880379	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1917130	0.86[CEU][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2056603	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs2056604	0.88[EUR][1000 genomes]
rs2241556	0.88[CEU][hapmap]
rs2293293	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.97[GIH][hapmap];0.85[MEX][hapmap];0.98[TSI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2293294	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2887797	0.88[CEU][hapmap];0.81[JPT][hapmap]
rs2888670	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3846055	0.89[JPT][hapmap]
rs3932818	0.83[CEU][hapmap];0.83[TSI][hapmap]
rs4074521	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.92[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4074523	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4245903	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.85[MEX][hapmap];0.98[TSI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4245904	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4245905	0.95[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4245907	0.91[JPT][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4245908	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4306899	0.95[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4306900	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4318591	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4435681	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4435682	1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4437193	0.92[CEU][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4456908	0.92[CEU][hapmap];0.83[CHB][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4498009	0.88[CEU][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap]
rs4519744	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4535271	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4539979	0.87[CEU][hapmap]
rs4543053	0.92[CEU][hapmap];0.90[GIH][hapmap];0.88[TSI][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4605591	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4634170	0.96[CEU][hapmap];0.83[CHB][hapmap];0.94[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4955468	0.92[CEU][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4955485	0.87[EUR][1000 genomes]
rs4955525	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.95[GIH][hapmap];0.85[MEX][hapmap];0.98[TSI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4955526	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.95[GIH][hapmap];0.85[MEX][hapmap];0.98[TSI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4955534	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4955542	0.95[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4955544	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4955545	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4955546	0.95[CEU][hapmap];0.83[CHB][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4955547	0.96[CEU][hapmap];0.83[CHB][hapmap];0.94[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4955548	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4955555	0.88[CEU][hapmap];0.81[TSI][hapmap]
rs4974480	0.87[CEU][hapmap]
rs55835132	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56899746	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs58491661	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs58808286	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62269560	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6439484	0.88[CEU][hapmap]
rs6763088	0.88[CEU][hapmap];0.91[JPT][hapmap];0.96[YRI][hapmap]
rs6763188	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6764764	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6766897	0.87[CEU][hapmap]
rs6768323	0.91[CEU][hapmap];0.91[JPT][hapmap];0.96[YRI][hapmap]
rs6769885	0.86[CEU][hapmap]
rs6772896	0.88[ASW][hapmap];0.88[CEU][hapmap];0.81[JPT][hapmap];0.98[LWK][hapmap];0.92[MEX][hapmap];0.96[MKK][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap]
rs6775611	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6779294	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6779326	0.96[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6782563	0.87[EUR][1000 genomes]
rs6785027	0.88[CEU][hapmap];0.81[TSI][hapmap]
rs6790338	0.90[JPT][hapmap]
rs6790466	0.86[JPT][hapmap];1.00[YRI][hapmap]
rs6793487	0.87[EUR][1000 genomes]
rs6794258	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6800862	0.83[CEU][hapmap]
rs6804770	0.88[CEU][hapmap]
rs6805388	0.87[CEU][hapmap];0.81[YRI][hapmap]
rs6806417	0.88[CEU][hapmap];0.81[TSI][hapmap]
rs6806810	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7356093	0.87[CEU][hapmap];0.91[JPT][hapmap]
rs7371896	0.88[CEU][hapmap]
rs7374325	0.88[CEU][hapmap];0.91[JPT][hapmap]
rs7427492	0.91[CEU][hapmap];0.91[JPT][hapmap]
rs7430034	0.96[CEU][hapmap];0.82[CHB][hapmap];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7433991	0.88[EUR][1000 genomes]
rs7611611	0.88[EUR][1000 genomes]
rs7619451	0.88[ASW][hapmap];0.88[CEU][hapmap];0.80[GIH][hapmap];0.91[JPT][hapmap];1.00[LWK][hapmap];0.84[MEX][hapmap];0.91[MKK][hapmap];0.83[TSI][hapmap];0.96[YRI][hapmap]
rs7623567	0.95[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7626557	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7630874	0.88[ASW][hapmap];0.88[CEU][hapmap];0.80[GIH][hapmap];0.91[JPT][hapmap];1.00[LWK][hapmap];0.84[MEX][hapmap];0.96[MKK][hapmap];0.83[TSI][hapmap];0.96[YRI][hapmap]
rs7633868	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7641798	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7642266	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7648616	1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7653807	0.88[CHD][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7653880	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9289471	0.88[CEU][hapmap];0.81[TSI][hapmap]
rs9289476	0.88[CEU][hapmap]
rs9289478	0.91[CEU][hapmap]
rs934093	0.83[JPT][hapmap];0.92[MEX][hapmap];0.83[TSI][hapmap]
rs9756173	0.83[EUR][1000 genomes]
rs9809344	0.92[CEU][hapmap];0.83[CHB][hapmap];0.83[CHD][hapmap];0.90[GIH][hapmap];0.88[TSI][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9809619	0.88[CEU][hapmap]
rs9813774	0.88[CEU][hapmap]
rs9814567	0.88[ASW][hapmap];0.88[CEU][hapmap];0.80[GIH][hapmap];0.91[JPT][hapmap];1.00[LWK][hapmap];0.92[MEX][hapmap];0.96[MKK][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap]
rs9824185	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9828815	0.88[CEU][hapmap]
rs9835204	0.88[CEU][hapmap];0.81[TSI][hapmap]
rs9836401	0.96[CEU][hapmap];0.83[CHB][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9838119	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9838467	0.96[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9838621	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9838889	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9839705	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9841180	0.87[CEU][hapmap]
rs9841212	0.88[CEU][hapmap]
rs9841371	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9846111	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9847788	0.88[CEU][hapmap];0.88[YRI][hapmap]
rs9848254	0.96[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9851441	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs9854299	0.88[CEU][hapmap]
rs9855013	0.87[CEU][hapmap]
rs9857242	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.95[GIH][hapmap];0.98[TSI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9857995	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.95[GIH][hapmap];0.97[TSI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9864346	0.87[CEU][hapmap];0.88[EUR][1000 genomes]
rs9871226	0.96[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9876658	0.88[CEU][hapmap]
rs9883753	0.86[CEU][hapmap]
rs9968172	0.88[ASW][hapmap];0.88[CEU][hapmap];0.80[GIH][hapmap];0.91[JPT][hapmap];1.00[LWK][hapmap];0.84[MEX][hapmap];0.96[MKK][hapmap];0.83[TSI][hapmap];0.96[YRI][hapmap]
rs9985341	0.88[CEU][hapmap]
rs9985356	0.88[CEU][hapmap];0.81[TSI][hapmap]
rs9989967	0.88[CEU][hapmap];0.81[TSI][hapmap]
rs9990351	0.88[CEU][hapmap];0.81[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877510	chr3:134126150-134400448	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv877511	chr3:134174071-134358947	Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv877512	chr3:134174071-134372486	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv877513	chr3:134174071-134379752	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv877514	chr3:134191938-134372486	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv829730	chr3:134199097-134359544	Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
7	nsv1002382	chr3:134239191-134358001	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:31)

SNP	Gene	Cis/trans	Tissue	Source
rs4074522	ANAPC13	cis	multi-tissue	Pritchard
rs4074522	ANAPC13	cis	Stomach	GTEx
rs4074522	CEP63	cis	Esophagus Muscularis	GTEx
rs4074522	ANAPC13	Cis_1M	lymphoblastoid	RTeQTL
rs4074522	ANAPC13	cis	Heart Left Ventricle	GTEx
rs4074522	ANAPC13	cis	Adipose Subcutaneous	GTEx
rs4074522	ANAPC13	cis	normal skin	skin_eQTL
rs4074522	CEP63	cis	Artery Tibial	GTEx
rs4074522	ANAPC13	cis	lesional skin	skin_eQTL
rs4074522	CEP63	cis	parietal	SCAN
rs4074522	CEP63	cis	Skin Sun Exposed Lower leg	GTEx
rs4074522	ANAPC13	cis	Nerve Tibial	GTEx
rs4074522	TXNDC6	cis	cerebellum	SCAN
rs4074522	CEP63	cis	Muscle Skeletal	GTEx
rs4074522	CEP63	cis	Esophagus Mucosa	GTEx
rs4074522	KY	cis	cerebellum	SCAN
rs4074522	ANAPC13	cis	Muscle Skeletal	GTEx
rs4074522	ANAPC13	cis	Thyroid	GTEx
rs4074522	ANAPC13	cis	lung	GTEx
rs4074522	ANAPC13	cis	Artery Aorta	GTEx
rs4074522	ANAPC13	cis	uninvolved skin	skin_eQTL
rs4074522	ANAPC13	cis	Artery Tibial	GTEx
rs4074522	ANAPC13	cis	parietal	SCAN
rs4074522	ANAPC13	cis	Skin Sun Exposed Lower leg	GTEx
rs4074522	ANAPC13	cis	lymphoblastoid	seeQTL
rs4074522	ANAPC13	cis	cerebellum	SCAN
rs4074522	ANAPC13	cis	Esophagus Mucosa	GTEx
rs4074522	EPHB1	cis	cerebellum	SCAN
rs4074522	CEP63	cis	lung	GTEx
rs4074522	CEP63	Cis_1M	lymphoblastoid	RTeQTL
rs4074522	ANAPC13	cis	Esophagus Muscularis	GTEx

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134319600-134334600	Weak transcription	Aorta	Aorta
2	chr3:134319800-134353800	Weak transcription	Left Ventricle	heart
3	chr3:134320400-134338000	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr3:134321200-134335200	Weak transcription	Ovary	ovary
5	chr3:134321400-134327800	Weak transcription	Brain Angular Gyrus	brain
6	chr3:134321600-134326200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr3:134321600-134326400	Weak transcription	Fetal Intestine Small	intestine
8	chr3:134321600-134329200	Weak transcription	Fetal Lung	lung
9	chr3:134321600-134336800	Weak transcription	Brain Anterior Caudate	brain
10	chr3:134321600-134349200	Weak transcription	Brain Substantia Nigra	brain
11	chr3:134321800-134328400	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr3:134321800-134337400	Weak transcription	Brain Cingulate Gyrus	brain
13	chr3:134321800-134337800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr3:134322000-134328800	Weak transcription	Brain Hippocampus Middle	brain
15	chr3:134322200-134331200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr3:134322600-134331200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr3:134323200-134326200	Weak transcription	Gastric	stomach
18	chr3:134324000-134326000	Weak transcription	Stomach Smooth Muscle	stomach
19	chr3:134324000-134327400	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr3:134324200-134326000	Enhancers	Spleen	Spleen
21	chr3:134324200-134326600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
22	chr3:134324400-134326200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
23	chr3:134324400-134327000	Enhancers	Primary hematopoietic stem cells	blood
24	chr3:134324800-134326400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr3:134324800-134329600	Weak transcription	Right Ventricle	heart
26	chr3:134324800-134333200	Genic enhancers	Skeletal Muscle Female	skeletal muscle
27	chr3:134325000-134327000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
28	chr3:134325200-134325800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr3:134325200-134326400	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr3:134325200-134326600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr3:134325200-134327000	Genic enhancers	Skeletal Muscle Male	skeletal muscle
32	chr3:134325200-134330400	Genic enhancers	Fetal Muscle Trunk	muscle
33	chr3:134325200-134331400	Genic enhancers	Fetal Muscle Leg	muscle
34	chr3:134325400-134326000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr3:134325400-134326000	Enhancers	Osteobl	bone
36	chr3:134325400-134326400	Enhancers	Adipose Nuclei	Adipose
37	chr3:134325400-134326800	Enhancers	Psoas Muscle	Psoas
38	chr3:134325400-134327000	Enhancers	Lung	lung
39	chr3:134325600-134326000	Enhancers	Fetal Heart	heart
40	chr3:134325600-134326200	Enhancers	Liver	Liver
41	chr3:134325600-134329600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr3:134325600-134332200	Enhancers	Primary hematopoietic stem cells short term culture	blood

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