Variant report

Variant	rs12637301
Chromosome Location	chr3:134317966-134317967
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:134203528..134205442-chr3:134316408..134318082,2	MCF-7	breast:
2	chr3:134317769..134318676-chr3:134359954..134360736,2	MCF-7	breast:
3	chr3:134317378..134319785-chr3:134321623..134324001,2	K562	blood:

Variant related genes	Relation type
ENSG00000182923	Chromatin interaction
ENSG00000129055	Chromatin interaction

Extended variants
information (count: 172 )
Associated
traits (count: 23 )

rSNPs within LD-proxies of this variant (count:165)

rs_ID	r²[population]
rs10804632	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10935120	0.87[CEU][hapmap];0.93[JPT][hapmap];0.83[YRI][hapmap]
rs10935123	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1138273	0.84[CEU][hapmap]
rs11708531	0.87[CEU][hapmap];0.93[JPT][hapmap]
rs11915964	0.81[EUR][1000 genomes]
rs11919350	0.88[CEU][hapmap]
rs11919458	0.87[EUR][1000 genomes]
rs11927539	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11927540	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12490835	0.83[CEU][hapmap]
rs12492930	0.84[CEU][hapmap];0.93[JPT][hapmap]
rs12637751	0.87[CEU][hapmap]
rs13064209	0.96[CEU][hapmap];0.83[CHB][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13071551	0.88[EUR][1000 genomes]
rs13075117	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13075253	0.96[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13076825	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13084192	0.96[CEU][hapmap];0.83[CHB][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13088413	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13089566	0.81[EUR][1000 genomes]
rs13096604	0.84[CEU][hapmap]
rs13098546	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13322305	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1357762	0.84[CEU][hapmap];0.94[JPT][hapmap];0.81[YRI][hapmap]
rs1357764	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1404289	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1498718	0.87[CEU][hapmap];0.86[JPT][hapmap];0.83[YRI][hapmap]
rs1534025	0.84[CEU][hapmap];0.88[EUR][1000 genomes]
rs1534029	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1534030	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17694011	0.94[JPT][hapmap]
rs1814336	0.87[CEU][hapmap]
rs1814337	0.94[JPT][hapmap]
rs1863913	0.87[CEU][hapmap];0.93[JPT][hapmap]
rs1874883	0.87[CEU][hapmap]
rs1880374	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1880375	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1880376	0.84[CEU][hapmap]
rs1880378	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1880379	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1917130	0.87[CEU][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2056603	0.84[CEU][hapmap];0.93[JPT][hapmap];0.81[YRI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2056604	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2241556	0.87[CEU][hapmap]
rs2293293	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2293294	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2887797	0.84[CEU][hapmap]
rs2888670	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3932818	0.83[CEU][hapmap]
rs4074521	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4074522	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4074523	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4245903	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4245904	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4245905	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4245907	0.81[EUR][1000 genomes]
rs4245908	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4306899	0.96[CEU][hapmap];0.83[CHB][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4306900	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4318591	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4435681	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4435682	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4437193	0.92[CEU][hapmap];0.81[YRI][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4456908	0.92[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4498009	0.84[CEU][hapmap]
rs4519744	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4535271	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4539979	0.84[CEU][hapmap];0.93[JPT][hapmap];0.81[YRI][hapmap]
rs4543053	0.92[CEU][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4605591	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4634170	0.96[CEU][hapmap];0.83[CHB][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4955468	0.92[CEU][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4955485	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4955525	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4955526	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4955534	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4955542	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4955544	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4955545	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4955546	0.95[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4955547	0.96[CEU][hapmap];0.83[CHB][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4955548	0.82[ASN][1000 genomes]
rs4955555	0.87[CEU][hapmap];0.93[JPT][hapmap]
rs4974480	0.88[CEU][hapmap]
rs55835132	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56899746	0.86[EUR][1000 genomes]
rs58491661	0.81[EUR][1000 genomes]
rs58808286	0.84[EUR][1000 genomes]
rs62269560	0.88[EUR][1000 genomes]
rs6439484	0.84[CEU][hapmap];0.93[JPT][hapmap]
rs6763088	0.84[CEU][hapmap]
rs6763188	0.81[EUR][1000 genomes]
rs6764764	0.96[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6766897	0.84[CEU][hapmap]
rs6768323	0.88[CEU][hapmap]
rs6769885	0.83[CEU][hapmap];0.93[JPT][hapmap]
rs6772896	0.87[CEU][hapmap]
rs6775611	0.81[EUR][1000 genomes]
rs6779294	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6779326	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6782563	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6785027	0.87[CEU][hapmap];0.93[JPT][hapmap]
rs6793487	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6794258	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6800862	0.83[CEU][hapmap]
rs6804770	0.84[CEU][hapmap];0.94[JPT][hapmap]
rs6805388	0.87[CEU][hapmap]
rs6806417	0.87[CEU][hapmap];0.93[JPT][hapmap]
rs6806810	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7356093	0.88[CEU][hapmap]
rs7371896	0.84[CEU][hapmap];0.93[JPT][hapmap]
rs7374325	0.84[CEU][hapmap]
rs7427492	0.88[CEU][hapmap]
rs7430034	0.96[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7433663	0.93[JPT][hapmap]
rs7433991	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7611611	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7619451	0.87[CEU][hapmap]
rs7623567	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7626557	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7630874	0.87[CEU][hapmap]
rs7633868	0.81[JPT][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7641798	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7642266	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7648616	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7653807	0.82[ASN][1000 genomes]
rs7653880	0.81[EUR][1000 genomes]
rs9289471	0.87[CEU][hapmap];0.93[JPT][hapmap]
rs9289476	0.84[CEU][hapmap];0.93[JPT][hapmap];0.81[YRI][hapmap]
rs9289478	0.91[CEU][hapmap];0.94[JPT][hapmap];0.80[YRI][hapmap]
rs9756173	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9809344	0.92[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9809619	0.87[CEU][hapmap];0.93[JPT][hapmap]
rs9813774	0.84[CEU][hapmap];0.94[JPT][hapmap]
rs9814567	0.87[CEU][hapmap]
rs9824185	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9828815	0.88[CEU][hapmap];0.93[JPT][hapmap]
rs9835204	0.87[CEU][hapmap];0.93[JPT][hapmap]
rs9836401	0.96[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9838119	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9838467	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9838621	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9838889	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9839705	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9841180	0.84[CEU][hapmap]
rs9841212	0.87[CEU][hapmap]
rs9841371	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9846111	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9847788	0.84[CEU][hapmap]
rs9848254	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9851441	0.84[CEU][hapmap];0.93[JPT][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9854299	0.84[CEU][hapmap]
rs9855013	0.84[CEU][hapmap];0.93[JPT][hapmap]
rs9857242	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9857995	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9864346	0.84[CEU][hapmap];0.93[JPT][hapmap];0.84[YRI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9871226	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9876658	0.87[CEU][hapmap]
rs9883753	0.83[CEU][hapmap];0.80[YRI][hapmap]
rs9968172	0.87[CEU][hapmap]
rs9985341	0.84[CEU][hapmap];0.93[JPT][hapmap]
rs9985356	0.87[CEU][hapmap];0.93[JPT][hapmap];0.83[YRI][hapmap]
rs9989967	0.87[CEU][hapmap];0.93[JPT][hapmap];0.83[YRI][hapmap]
rs9990351	0.87[CEU][hapmap];0.93[JPT][hapmap];0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877510	chr3:134126150-134400448	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv877511	chr3:134174071-134358947	Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv877512	chr3:134174071-134372486	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv877513	chr3:134174071-134379752	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv877514	chr3:134191938-134372486	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv829730	chr3:134199097-134359544	Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
7	nsv1002382	chr3:134239191-134358001	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:23)

SNP	Gene	Cis/trans	Tissue	Source
rs12637301	ANAPC13	cis	uninvolved skin	skin_eQTL
rs12637301	ANAPC13	cis	Stomach	GTEx
rs12637301	ANAPC13	cis	multi-tissue	Pritchard
rs12637301	ANAPC13	cis	Esophagus Mucosa	GTEx
rs12637301	ANAPC13	cis	Thyroid	GTEx
rs12637301	CEP63	cis	Artery Tibial	GTEx
rs12637301	CEP63	Cis_1M	lymphoblastoid	RTeQTL
rs12637301	ANAPC13	cis	lesional skin	skin_eQTL
rs12637301	ANAPC13	Cis_1M	lymphoblastoid	RTeQTL
rs12637301	ANAPC13	cis	Skin Sun Exposed Lower leg	GTEx
rs12637301	CEP63	cis	Esophagus Mucosa	GTEx
rs12637301	ANAPC13	cis	Artery Tibial	GTEx
rs12637301	ANAPC13	cis	lung	GTEx
rs12637301	CEP63	cis	lung	GTEx
rs12637301	ANAPC13	cis	Nerve Tibial	GTEx
rs12637301	CEP63	cis	Skin Sun Exposed Lower leg	GTEx
rs12637301	ANAPC13	cis	Adipose Subcutaneous	GTEx
rs12637301	ANAPC13	cis	Artery Aorta	GTEx
rs12637301	ANAPC13	cis	Muscle Skeletal	GTEx
rs12637301	CEP63	cis	Esophagus Muscularis	GTEx
rs12637301	CEP63	cis	Muscle Skeletal	GTEx
rs12637301	ANAPC13	cis	normal skin	skin_eQTL
rs12637301	ANAPC13	cis	Esophagus Muscularis	GTEx

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134311600-134320400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
2	chr3:134313400-134319400	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr3:134313400-134321600	Weak transcription	Spleen	Spleen
4	chr3:134315800-134318400	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr3:134316600-134319400	Active TSS	Primary B cells from cord blood	blood
6	chr3:134316600-134322200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr3:134317200-134318400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr3:134317200-134319200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr3:134317200-134319400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr3:134317200-134320000	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr3:134317400-134319800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr3:134317400-134322000	Enhancers	Fetal Brain Male	brain
13	chr3:134317600-134318000	Enhancers	GM12878-XiMat	blood
14	chr3:134317600-134318200	Enhancers	Brain Angular Gyrus	brain
15	chr3:134317600-134318200	Enhancers	Brain Germinal Matrix	brain
16	chr3:134317600-134318200	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr3:134317600-134319200	Weak transcription	HMEC	breast
18	chr3:134317600-134319400	Weak transcription	NHEK	skin
19	chr3:134317600-134319800	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr3:134317800-134318000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr3:134317800-134318000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr3:134317800-134318000	Enhancers	Brain Anterior Caudate	brain
23	chr3:134317800-134318000	Enhancers	Brain Hippocampus Middle	brain
24	chr3:134317800-134318000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
25	chr3:134317800-134319400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr3:134317800-134319600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr3:134317800-134319800	Enhancers	Fetal Brain Female	brain
28	chr3:134317800-134320000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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