Variant report

Variant	rs9857242
Chromosome Location	chr3:134316378-134316379
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr3:134316184-134316607	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
EPHB1	TF binding region

Extended variants
information (count: 173 )
Associated
traits (count: 29 )

rSNPs within LD-proxies of this variant (count:166)

rs_ID	r²[population]
rs10804632	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10935120	0.88[CEU][hapmap];0.86[JPT][hapmap];0.86[MEX][hapmap];0.84[MKK][hapmap];0.83[TSI][hapmap];0.83[YRI][hapmap]
rs10935123	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1138273	0.88[CEU][hapmap]
rs11708531	0.88[CEU][hapmap];0.86[JPT][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap]
rs11915964	0.83[CHD][hapmap];0.81[EUR][1000 genomes]
rs11919350	0.88[CEU][hapmap]
rs11919458	0.87[EUR][1000 genomes]
rs11927539	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11927540	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12490835	0.86[CEU][hapmap]
rs12492930	0.88[CEU][hapmap];0.86[JPT][hapmap]
rs12637301	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12637751	0.88[CEU][hapmap];0.80[GIH][hapmap];0.80[MEX][hapmap];0.81[TSI][hapmap]
rs13064209	0.96[CEU][hapmap];0.83[CHB][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13071551	0.88[EUR][1000 genomes]
rs13075117	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13075253	0.96[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13076825	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13084192	0.96[CEU][hapmap];0.83[CHB][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13088413	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13089566	0.81[EUR][1000 genomes]
rs13096604	0.88[CEU][hapmap]
rs13098546	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13322305	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1357762	0.87[CEU][hapmap];0.86[JPT][hapmap];0.82[YRI][hapmap]
rs1357764	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1404289	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1498718	0.88[CEU][hapmap];0.80[MEX][hapmap];0.87[MKK][hapmap];0.83[TSI][hapmap];0.83[YRI][hapmap]
rs1534025	0.87[CEU][hapmap];0.88[EUR][1000 genomes]
rs1534029	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1534030	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.93[JPT][hapmap];0.89[LWK][hapmap];0.86[MEX][hapmap];0.93[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17694011	0.82[CEU][hapmap];0.86[JPT][hapmap]
rs1814336	0.90[CEU][hapmap]
rs1814337	0.82[CEU][hapmap];0.86[JPT][hapmap]
rs1863913	0.88[CEU][hapmap];0.86[JPT][hapmap];0.86[MEX][hapmap];0.82[MKK][hapmap];0.83[TSI][hapmap]
rs1874883	0.88[CEU][hapmap];0.80[GIH][hapmap];0.81[TSI][hapmap]
rs1880374	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1880375	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1880376	0.88[CEU][hapmap]
rs1880378	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1880379	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1917130	0.86[CEU][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2056603	0.88[CEU][hapmap];0.86[JPT][hapmap];0.83[YRI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2056604	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2241556	0.88[CEU][hapmap];0.81[TSI][hapmap]
rs2293293	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.93[JPT][hapmap];0.94[LWK][hapmap];0.93[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2293294	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2887797	0.88[CEU][hapmap]
rs2888670	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3932818	0.83[CEU][hapmap];0.87[MKK][hapmap];0.85[TSI][hapmap]
rs4074521	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.95[GIH][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4074522	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.95[GIH][hapmap];0.98[TSI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4074523	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4245903	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.93[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4245904	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4245905	0.95[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4245907	0.81[EUR][1000 genomes]
rs4245908	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4306899	0.95[CEU][hapmap];0.83[CHB][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4306900	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4318591	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4435681	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4435682	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4437193	0.92[CEU][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4456908	0.92[CEU][hapmap];0.83[CHB][hapmap];0.93[JPT][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4498009	0.88[CEU][hapmap]
rs4519744	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4535271	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4539979	0.87[CEU][hapmap];0.86[JPT][hapmap];0.83[YRI][hapmap]
rs4543053	0.92[CEU][hapmap];0.90[GIH][hapmap];0.81[MEX][hapmap];0.91[TSI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4605591	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4634170	0.96[CEU][hapmap];0.83[CHB][hapmap];0.88[CHD][hapmap];0.90[GIH][hapmap];0.90[TSI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4955468	0.92[CEU][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4955485	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4955525	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.98[LWK][hapmap];0.93[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4955526	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.90[LWK][hapmap];0.93[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4955534	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4955542	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4955544	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4955545	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4955546	0.95[CEU][hapmap];0.83[CHB][hapmap];0.93[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4955547	0.96[CEU][hapmap];0.83[CHB][hapmap];0.88[CHD][hapmap];0.92[GIH][hapmap];0.90[TSI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4955548	0.82[ASN][1000 genomes]
rs4955555	0.88[CEU][hapmap];0.86[JPT][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap]
rs4974480	0.87[CEU][hapmap]
rs55835132	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56899746	0.86[EUR][1000 genomes]
rs58491661	0.81[EUR][1000 genomes]
rs58808286	0.84[EUR][1000 genomes]
rs62269560	0.88[EUR][1000 genomes]
rs6439484	0.88[CEU][hapmap];0.86[JPT][hapmap]
rs6763088	0.88[CEU][hapmap]
rs6763188	0.81[EUR][1000 genomes]
rs6764764	0.96[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6766897	0.87[CEU][hapmap]
rs6768323	0.91[CEU][hapmap]
rs6769885	0.86[CEU][hapmap];0.86[JPT][hapmap]
rs6772896	0.88[CEU][hapmap];0.81[TSI][hapmap]
rs6775611	0.81[EUR][1000 genomes]
rs6779294	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6779326	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6782563	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6785027	0.88[CEU][hapmap];0.86[JPT][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap]
rs6793487	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6794258	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6800862	0.83[CEU][hapmap];0.87[MKK][hapmap]
rs6804770	0.88[CEU][hapmap];0.86[JPT][hapmap]
rs6805388	0.87[CEU][hapmap]
rs6806417	0.88[CEU][hapmap];0.86[JPT][hapmap];0.83[TSI][hapmap]
rs6806810	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7356093	0.87[CEU][hapmap]
rs7371896	0.88[CEU][hapmap];0.86[JPT][hapmap]
rs7374325	0.88[CEU][hapmap]
rs7427492	0.91[CEU][hapmap]
rs7430034	0.96[CEU][hapmap];0.82[CHB][hapmap];0.92[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7433663	0.85[JPT][hapmap]
rs7433991	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7611611	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7619451	0.88[CEU][hapmap];0.80[GIH][hapmap];0.80[MEX][hapmap];0.81[TSI][hapmap]
rs7623567	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7626557	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7630874	0.88[CEU][hapmap];0.80[GIH][hapmap];0.80[MEX][hapmap];0.81[TSI][hapmap]
rs7633868	0.80[JPT][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7641798	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7642266	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7648616	1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7653807	0.83[CHD][hapmap];0.82[ASN][1000 genomes]
rs7653880	0.81[EUR][1000 genomes]
rs9289471	0.88[CEU][hapmap];0.86[JPT][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap]
rs9289476	0.88[CEU][hapmap];0.86[JPT][hapmap];0.83[YRI][hapmap]
rs9289478	0.91[CEU][hapmap];0.86[JPT][hapmap];0.81[YRI][hapmap]
rs934093	0.81[TSI][hapmap]
rs9756173	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9809344	0.92[CEU][hapmap];0.83[CHB][hapmap];0.88[CHD][hapmap];0.90[GIH][hapmap];0.93[JPT][hapmap];0.81[MEX][hapmap];0.90[TSI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9809619	0.88[CEU][hapmap];0.86[JPT][hapmap];0.86[MEX][hapmap];0.81[TSI][hapmap]
rs9813774	0.88[CEU][hapmap];0.86[JPT][hapmap]
rs9814567	0.88[CEU][hapmap];0.80[GIH][hapmap];0.81[TSI][hapmap]
rs9824185	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9828815	0.88[CEU][hapmap];0.93[JPT][hapmap]
rs9835204	0.88[CEU][hapmap];0.86[JPT][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap]
rs9836401	0.96[CEU][hapmap];0.83[CHB][hapmap];0.93[JPT][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9838119	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9838467	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9838621	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9838889	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9839705	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9841180	0.87[CEU][hapmap]
rs9841212	0.88[CEU][hapmap];0.81[TSI][hapmap]
rs9841371	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9846111	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9847788	0.88[CEU][hapmap]
rs9848254	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9851441	0.88[CEU][hapmap];0.86[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9854299	0.88[CEU][hapmap]
rs9855013	0.87[CEU][hapmap];0.86[JPT][hapmap]
rs9857995	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.94[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9864346	0.87[CEU][hapmap];0.86[JPT][hapmap];0.83[YRI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9871226	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9876658	0.88[CEU][hapmap];0.82[TSI][hapmap]
rs9883753	0.86[CEU][hapmap];0.83[YRI][hapmap]
rs9968172	0.88[CEU][hapmap];0.80[GIH][hapmap];0.80[MEX][hapmap];0.81[TSI][hapmap]
rs9985341	0.88[CEU][hapmap];0.86[JPT][hapmap]
rs9985356	0.88[CEU][hapmap];0.86[JPT][hapmap];0.86[MEX][hapmap];0.81[MKK][hapmap];0.83[TSI][hapmap];0.83[YRI][hapmap]
rs9989967	0.88[CEU][hapmap];0.86[JPT][hapmap];0.86[MEX][hapmap];0.87[MKK][hapmap];0.83[TSI][hapmap];0.83[YRI][hapmap]
rs9990351	0.88[CEU][hapmap];0.86[JPT][hapmap];0.86[MEX][hapmap];0.87[MKK][hapmap];0.83[TSI][hapmap];0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877510	chr3:134126150-134400448	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv877511	chr3:134174071-134358947	Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv877512	chr3:134174071-134372486	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv877513	chr3:134174071-134379752	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv877514	chr3:134191938-134372486	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv829730	chr3:134199097-134359544	Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
7	nsv1002382	chr3:134239191-134358001	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:29)

SNP	Gene	Cis/trans	Tissue	Source
rs9857242	ANAPC13	cis	parietal	SCAN
rs9857242	CEP63	cis	Esophagus Mucosa	GTEx
rs9857242	CEP63	cis	lung	GTEx
rs9857242	ANAPC13	cis	multi-tissue	Pritchard
rs9857242	ANAPC13	cis	lung	GTEx
rs9857242	ANAPC13	cis	Nerve Tibial	GTEx
rs9857242	ANAPC13	cis	Stomach	GTEx
rs9857242	CEP63	cis	Esophagus Muscularis	GTEx
rs9857242	ANAPC13	cis	lesional skin	skin_eQTL
rs9857242	CEP63	cis	parietal	SCAN
rs9857242	ANAPC13	cis	Thyroid	GTEx
rs9857242	CEP63	cis	multi-tissue	Pritchard
rs9857242	ANAPC13	cis	normal skin	skin_eQTL
rs9857242	CEP63	cis	Skin Sun Exposed Lower leg	GTEx
rs9857242	TXNDC6	cis	cerebellum	SCAN
rs9857242	ANAPC13	cis	Skin Sun Exposed Lower leg	GTEx
rs9857242	ANAPC13	cis	Esophagus Muscularis	GTEx
rs9857242	CEP63	cis	Artery Tibial	GTEx
rs9857242	ANAPC13	cis	Muscle Skeletal	GTEx
rs9857242	ANAPC13	cis	Adipose Subcutaneous	GTEx
rs9857242	ANAPC13	cis	cerebellum	SCAN
rs9857242	ANAPC13	cis	lymphoblastoid	seeQTL
rs9857242	ANAPC13	cis	uninvolved skin	skin_eQTL
rs9857242	ANAPC13	cis	Esophagus Mucosa	GTEx
rs9857242	EPHB1	cis	cerebellum	SCAN
rs9857242	ANAPC13	cis	Artery Tibial	GTEx
rs9857242	CEP63	cis	Muscle Skeletal	GTEx
rs9857242	KY	cis	cerebellum	SCAN
rs9857242	ANAPC13	cis	Artery Aorta	GTEx

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134311600-134320400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
2	chr3:134313400-134319400	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr3:134313400-134321600	Weak transcription	Spleen	Spleen
4	chr3:134313600-134316600	Weak transcription	Primary B cells from cord blood	blood
5	chr3:134314600-134316400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr3:134315600-134317000	Enhancers	Esophagus	oesophagus
7	chr3:134315600-134317800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr3:134315800-134316800	Enhancers	Pancreas	Pancrea
9	chr3:134315800-134317200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr3:134315800-134317800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr3:134315800-134317800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr3:134315800-134318400	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr3:134316000-134317200	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr3:134316200-134316400	Flanking Active TSS	NHEK	skin
15	chr3:134316200-134317400	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr3:134316200-134317600	Enhancers	HMEC	breast

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