Variant report

Variant	rs9289478
Chromosome Location	chr3:134268619-134268620
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:134268434..134270471-chr3:134278376..134280248,2	MCF-7	breast:
2	chr3:134264407..134266674-chr3:134268169..134270002,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000182923	Chromatin interaction

Extended variants
information (count: 231 )
Associated
traits (count: 27 )

rSNPs within LD-proxies of this variant (count:224)

rs_ID	r²[population]
rs10804632	0.93[ASN][1000 genomes]
rs10935113	0.87[EUR][1000 genomes]
rs10935120	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1138273	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11706117	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11708531	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11915964	0.91[CEU][hapmap]
rs11919350	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11919458	0.85[ASN][1000 genomes]
rs11927068	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11928499	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12490835	0.95[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12492930	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12637301	0.91[CEU][hapmap];0.94[JPT][hapmap];0.80[YRI][hapmap]
rs12637751	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13059720	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13064209	0.88[CEU][hapmap]
rs13065405	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13065773	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13075117	0.87[CEU][hapmap]
rs13075253	0.88[CEU][hapmap]
rs13076825	0.87[CEU][hapmap]
rs13081177	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13081688	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13084192	0.88[CEU][hapmap]
rs13087875	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13088413	0.81[ASN][1000 genomes]
rs13089566	0.91[CEU][hapmap]
rs13089966	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13096604	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13098546	0.88[CEU][hapmap]
rs13316205	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13322305	0.84[ASN][1000 genomes]
rs1357762	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1357764	0.91[CEU][hapmap]
rs1498718	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1534025	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs1534026	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1534027	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1534028	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1534030	0.86[CEU][hapmap];0.93[JPT][hapmap]
rs17694011	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1814336	1.00[CEU][hapmap];0.93[CHB][hapmap];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1814337	0.95[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1863912	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1863913	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1874883	1.00[CEU][hapmap];0.85[CHB][hapmap];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1880375	0.91[CEU][hapmap];0.93[JPT][hapmap]
rs1880376	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1880377	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1917130	0.95[CEU][hapmap];1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs2056603	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[ASN][1000 genomes]
rs2056604	0.84[ASN][1000 genomes]
rs2177601	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2177602	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2241556	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2293293	0.91[CEU][hapmap];0.93[JPT][hapmap];0.81[YRI][hapmap]
rs2293294	0.91[CEU][hapmap]
rs2370578	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2370641	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2370642	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2373865	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28409322	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28702610	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2887797	1.00[CEU][hapmap];0.93[CHB][hapmap];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2888670	0.91[CEU][hapmap];0.93[JPT][hapmap]
rs34029813	0.88[EUR][1000 genomes]
rs35718987	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35933983	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36006513	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3846055	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3846056	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3856729	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3932818	0.95[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4074521	0.91[CEU][hapmap]
rs4074522	0.91[CEU][hapmap]
rs4245903	0.91[CEU][hapmap];0.93[JPT][hapmap]
rs4245905	0.87[CEU][hapmap];0.93[JPT][hapmap]
rs4245907	0.91[CEU][hapmap]
rs4306899	0.86[CEU][hapmap]
rs4309773	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4367113	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4417907	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4435682	0.91[CEU][hapmap]
rs4437193	0.84[CEU][hapmap]
rs4456908	0.88[CEU][hapmap];0.94[JPT][hapmap]
rs4498009	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4539979	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4543053	0.83[CEU][hapmap]
rs4572812	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4634170	0.87[CEU][hapmap]
rs4955468	0.88[CEU][hapmap]
rs4955485	0.90[ASN][1000 genomes]
rs4955525	0.91[CEU][hapmap];0.93[JPT][hapmap]
rs4955526	0.91[CEU][hapmap];0.93[JPT][hapmap];0.80[YRI][hapmap]
rs4955534	0.91[CEU][hapmap];0.94[JPT][hapmap];0.80[YRI][hapmap]
rs4955542	0.87[CEU][hapmap];0.92[JPT][hapmap];0.85[YRI][hapmap]
rs4955546	0.87[CEU][hapmap];0.93[JPT][hapmap]
rs4955547	0.87[CEU][hapmap]
rs4955555	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4974478	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4974480	1.00[CEU][hapmap];0.86[YRI][hapmap];0.88[EUR][1000 genomes]
rs4974481	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4974483	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4974484	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4974493	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55913793	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56899746	0.85[ASN][1000 genomes]
rs62269547	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62269560	0.81[ASN][1000 genomes]
rs6439484	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6439487	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6439492	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6763088	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6763093	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6763188	0.91[CEU][hapmap]
rs6764764	0.87[CEU][hapmap]
rs6765505	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6766818	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6766897	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs6768323	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6769885	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6772406	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6772896	1.00[CEU][hapmap];0.93[CHB][hapmap];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6775611	0.91[CEU][hapmap]
rs6776203	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6779326	0.88[CEU][hapmap];0.94[JPT][hapmap]
rs6782128	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6782563	0.90[ASN][1000 genomes]
rs6785027	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6787371	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6790338	0.91[CHB][hapmap];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6790466	0.92[CHB][hapmap];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6793487	0.90[ASN][1000 genomes]
rs6799110	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6799543	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6800862	0.95[CEU][hapmap];0.93[CHB][hapmap];0.82[JPT][hapmap];0.87[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6801596	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6802654	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6804770	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6805388	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs6806417	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6806810	0.91[CEU][hapmap];0.94[JPT][hapmap]
rs7356093	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7371896	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7372770	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7373874	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7374158	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7374325	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7427492	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7428326	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7429866	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7430034	0.87[CEU][hapmap];0.93[JPT][hapmap]
rs7432268	0.93[CHB][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7433663	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7433991	0.84[ASN][1000 genomes]
rs7611611	0.84[ASN][1000 genomes]
rs7611828	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7619451	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7623567	0.91[CEU][hapmap];0.92[JPT][hapmap]
rs7626557	0.95[CEU][hapmap];0.93[JPT][hapmap]
rs7627654	0.85[EUR][1000 genomes]
rs7627726	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7630874	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7637227	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7648616	0.93[JPT][hapmap];0.85[YRI][hapmap]
rs7648990	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7649910	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7653807	0.91[CEU][hapmap]
rs9289471	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9289475	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9289476	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs934093	0.91[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9756173	0.84[ASN][1000 genomes]
rs9809344	0.83[CEU][hapmap];0.93[JPT][hapmap]
rs9809619	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9813774	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9814567	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9815297	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9815894	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9815983	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9819532	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9820150	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9820425	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9824185	0.91[CEU][hapmap];0.94[JPT][hapmap];0.80[YRI][hapmap]
rs9826496	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9827672	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9827987	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9828815	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9829092	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9832785	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9833753	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9834755	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9835204	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9836401	0.88[CEU][hapmap];0.93[JPT][hapmap]
rs9838119	0.88[CEU][hapmap];0.94[JPT][hapmap]
rs9838467	0.88[CEU][hapmap];0.93[JPT][hapmap]
rs9838834	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9841180	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs9841212	1.00[CEU][hapmap];0.89[YRI][hapmap];0.92[EUR][1000 genomes]
rs9841371	0.95[CEU][hapmap];0.94[JPT][hapmap]
rs9844537	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9847788	1.00[CEU][hapmap]
rs9848254	0.88[CEU][hapmap];0.93[JPT][hapmap]
rs9850015	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9851441	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.84[ASN][1000 genomes]
rs9854299	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9855013	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9857242	0.91[CEU][hapmap];0.86[JPT][hapmap];0.81[YRI][hapmap]
rs9857995	0.91[CEU][hapmap];0.93[JPT][hapmap]
rs9863786	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9864346	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[ASN][1000 genomes]
rs9869981	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9870262	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9871226	0.87[CEU][hapmap];0.93[JPT][hapmap]
rs9871305	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9876658	1.00[CEU][hapmap];0.81[JPT][hapmap];0.89[YRI][hapmap];0.88[EUR][1000 genomes]
rs9883753	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9884031	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9968172	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9985341	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9985356	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9989967	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9990351	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877510	chr3:134126150-134400448	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv877511	chr3:134174071-134358947	Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv877512	chr3:134174071-134372486	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv877513	chr3:134174071-134379752	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv877514	chr3:134191938-134372486	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv829730	chr3:134199097-134359544	Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
7	nsv1002382	chr3:134239191-134358001	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:27)

SNP	Gene	Cis/trans	Tissue	Source
rs9289478	ANAPC13	cis	Adipose Subcutaneous	GTEx
rs9289478	ANAPC13	cis	Muscle Skeletal	GTEx
rs9289478	ANAPC13	cis	Thyroid	GTEx
rs9289478	ANAPC13	cis	Nerve Tibial	GTEx
rs9289478	ANAPC13	cis	Stomach	GTEx
rs9289478	ANAPC13	cis	lung	GTEx
rs9289478	ANAPC13	cis	normal skin	skin_eQTL
rs9289478	ANAPC13	cis	Artery Tibial	GTEx
rs9289478	CEP63	cis	Esophagus Mucosa	GTEx
rs9289478	CEP63	cis	Whole Blood	GTEx
rs9289478	ANAPC13	Cis_1M	lymphoblastoid	RTeQTL
rs9289478	CEP63	cis	lung	GTEx
rs9289478	CEP63	cis	Artery Tibial	GTEx
rs9289478	ANAPC13	cis	Artery Aorta	GTEx
rs9289478	ANAPC13	cis	Esophagus Mucosa	GTEx
rs9289478	CEP63	cis	Nerve Tibial	GTEx
rs9289478	ANAPC13	cis	Heart Left Ventricle	GTEx
rs9289478	CEP63	cis	lesional skin	skin_eQTL
rs9289478	ANAPC13	cis	multi-tissue	Pritchard
rs9289478	CEP63	cis	Esophagus Muscularis	GTEx
rs9289478	CEP63	cis	Muscle Skeletal	GTEx
rs9289478	ANAPC13	cis	uninvolved skin	skin_eQTL
rs9289478	ANAPC13	cis	Esophagus Muscularis	GTEx
rs9289478	ANAPC13	cis	lesional skin	skin_eQTL
rs9289478	CEP63	cis	Skin Sun Exposed Lower leg	GTEx
rs9289478	CEP63	Cis_1M	lymphoblastoid	RTeQTL
rs9289478	ANAPC13	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134244800-134269600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr3:134246200-134280800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:134246600-134269200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:134246600-134281800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:134250400-134269400	Weak transcription	Psoas Muscle	Psoas
6	chr3:134250400-134269600	Weak transcription	HMEC	breast
7	chr3:134250400-134282000	Weak transcription	Stomach Mucosa	stomach
8	chr3:134253200-134280000	Weak transcription	NH-A	brain
9	chr3:134256600-134269000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr3:134256600-134269200	Weak transcription	Colonic Mucosa	Colon
11	chr3:134256600-134287200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr3:134256800-134269000	Weak transcription	Spleen	Spleen
13	chr3:134256800-134269000	Weak transcription	HepG2	liver
14	chr3:134256800-134269200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr3:134256800-134269200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr3:134256800-134269200	Weak transcription	Aorta	Aorta
17	chr3:134256800-134269200	Weak transcription	Rectal Smooth Muscle	rectum
18	chr3:134256800-134269400	Weak transcription	Brain Germinal Matrix	brain
19	chr3:134256800-134271000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr3:134256800-134274400	Weak transcription	Fetal Heart	heart
21	chr3:134256800-134274800	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr3:134256800-134280800	Weak transcription	Right Ventricle	heart
23	chr3:134257000-134269200	Weak transcription	Brain Cingulate Gyrus	brain
24	chr3:134257400-134271000	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr3:134258000-134271000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr3:134262800-134272800	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr3:134263800-134271000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr3:134263800-134272800	Strong transcription	Primary T cells from cord blood	blood
29	chr3:134264000-134271400	Strong transcription	Sigmoid Colon	Sigmoid Colon
30	chr3:134264000-134272200	Strong transcription	Fetal Muscle Trunk	muscle
31	chr3:134264200-134272600	Strong transcription	Dnd41	blood
32	chr3:134264200-134272800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr3:134264200-134272800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr3:134264200-134272800	Strong transcription	Primary T cells fromperipheralblood	blood
35	chr3:134264200-134272800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr3:134264200-134272800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr3:134264400-134269800	Strong transcription	HUES48 Cell Line	embryonic stem cell
38	chr3:134264400-134270200	Strong transcription	Rectal Mucosa Donor 31	rectum
39	chr3:134264400-134271200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr3:134264400-134271200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr3:134264400-134271800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr3:134264400-134272400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr3:134264400-134272600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr3:134264400-134272600	Strong transcription	Primary T helper cells PMA-I stimulated	--
45	chr3:134264400-134272600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr3:134264400-134272800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr3:134264400-134272800	Strong transcription	HUES64 Cell Line	embryonic stem cell
48	chr3:134264400-134272800	Strong transcription	Primary B cells from peripheral blood	blood
49	chr3:134264400-134272800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr3:134264400-134272800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links