Variant report

Variant	rs35718987
Chromosome Location	chr3:134272783-134272784
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:134270443..134272968-chr3:134275419..134277826,2	MCF-7	breast:

Extended variants
information (count: 179 )
Associated
traits (count: 23 )

rSNPs within LD-proxies of this variant (count:172)

rs_ID	r²[population]
rs10804632	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10935113	0.83[EUR][1000 genomes]
rs10935120	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1138273	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11706117	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11708531	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11919350	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11919458	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11927068	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11928499	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12490835	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12492930	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12637751	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13059720	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13065405	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13065773	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13071551	0.86[ASN][1000 genomes]
rs13081177	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13081688	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13087875	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13088413	0.88[ASN][1000 genomes]
rs13089966	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13096604	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13316205	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13322305	0.83[ASN][1000 genomes]
rs1357762	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1498718	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1534025	0.88[ASN][1000 genomes]
rs1534026	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1534027	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1534028	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17694011	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1814336	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1814337	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1863911	0.81[ASN][1000 genomes]
rs1863912	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1863913	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1874883	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1880376	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1880377	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1917130	0.88[ASN][1000 genomes]
rs2056603	0.83[ASN][1000 genomes]
rs2056604	0.83[ASN][1000 genomes]
rs2177601	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2177602	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2241556	0.84[EUR][1000 genomes]
rs2370578	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2370641	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2370642	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2373865	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28409322	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28702610	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2887797	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34029813	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35933983	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36006513	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3846055	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3846056	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3856729	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3932818	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4309773	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4367113	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4417907	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4498009	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4539979	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4572812	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4955485	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4955555	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4974478	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4974480	0.83[EUR][1000 genomes]
rs4974481	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4974483	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4974484	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4974493	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55913793	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56899746	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58808286	0.84[ASN][1000 genomes]
rs62269547	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62269560	0.88[ASN][1000 genomes]
rs6439484	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6439487	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6439492	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6763088	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6763093	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6765505	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6766818	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6766897	0.87[EUR][1000 genomes]
rs6768323	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6769885	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6772406	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6772896	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6776203	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6782128	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6782563	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6785027	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6787371	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6790338	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6790466	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6793487	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6799110	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6799543	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6800862	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6801596	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6802654	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6804770	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6805388	0.82[EUR][1000 genomes]
rs6806417	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7356093	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7371896	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7372770	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7373874	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7374158	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7374325	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7427492	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7428326	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7429866	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7432268	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7433663	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7433991	0.83[ASN][1000 genomes]
rs7611611	0.82[ASN][1000 genomes]
rs7611828	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7619451	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7627726	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7630874	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7637227	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7648990	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7649910	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9289471	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9289475	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9289476	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9289478	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs934093	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9756173	0.81[ASN][1000 genomes]
rs9809619	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9813774	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9814567	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9815297	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9815894	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9815983	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9819532	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9820150	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9820425	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9826496	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9827672	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9827987	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9828815	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9829092	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9832785	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9833753	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9834755	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9835204	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9838834	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9841180	0.89[EUR][1000 genomes]
rs9841212	0.87[EUR][1000 genomes]
rs9844537	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9850015	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9851441	0.83[ASN][1000 genomes]
rs9854299	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9855013	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9863786	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9864346	0.83[ASN][1000 genomes]
rs9869981	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9870262	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9871305	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9876658	0.83[EUR][1000 genomes]
rs9883753	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9884031	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9968172	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9985341	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9985356	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9989967	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9990351	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877510	chr3:134126150-134400448	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv877511	chr3:134174071-134358947	Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv877512	chr3:134174071-134372486	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv877513	chr3:134174071-134379752	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv877514	chr3:134191938-134372486	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv829730	chr3:134199097-134359544	Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
7	nsv1002382	chr3:134239191-134358001	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:23)

SNP	Gene	Cis/trans	Tissue	Source
rs35718987	ANAPC13	cis	Thyroid	GTEx
rs35718987	ANAPC13	cis	Heart Left Ventricle	GTEx
rs35718987	ANAPC13	cis	multi-tissue	Pritchard
rs35718987	ANAPC13	cis	lung	GTEx
rs35718987	ANAPC13	cis	Skin Sun Exposed Lower leg	GTEx
rs35718987	ANAPC13	cis	Nerve Tibial	GTEx
rs35718987	ANAPC13	cis	Esophagus Muscularis	GTEx
rs35718987	CEP63	cis	lung	GTEx
rs35718987	ANAPC13	cis	Artery Aorta	GTEx
rs35718987	ANAPC13	cis	Muscle Skeletal	GTEx
rs35718987	ANAPC13	cis	Stomach	GTEx
rs35718987	ANAPC13	cis	Whole Blood	GTEx
rs35718987	ANAPC13	cis	Esophagus Mucosa	GTEx
rs35718987	ANAPC13	Cis_1M	lymphoblastoid	RTeQTL
rs35718987	CEP63	cis	Esophagus Mucosa	GTEx
rs35718987	CEP63	cis	Skin Sun Exposed Lower leg	GTEx
rs35718987	CEP63	Cis_1M	lymphoblastoid	RTeQTL
rs35718987	CEP63	cis	Nerve Tibial	GTEx
rs35718987	CEP63	cis	Muscle Skeletal	GTEx
rs35718987	CEP63	cis	Artery Tibial	GTEx
rs35718987	CEP63	cis	Esophagus Muscularis	GTEx
rs35718987	ANAPC13	cis	Adipose Subcutaneous	GTEx
rs35718987	ANAPC13	cis	Artery Tibial	GTEx

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134246200-134280800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:134246600-134281800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:134250400-134282000	Weak transcription	Stomach Mucosa	stomach
4	chr3:134253200-134280000	Weak transcription	NH-A	brain
5	chr3:134256600-134287200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr3:134256800-134274400	Weak transcription	Fetal Heart	heart
7	chr3:134256800-134274800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr3:134256800-134280800	Weak transcription	Right Ventricle	heart
9	chr3:134262800-134272800	Strong transcription	Primary T helper cells fromperipheralblood	blood
10	chr3:134263800-134272800	Strong transcription	Primary T cells from cord blood	blood
11	chr3:134264200-134272800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr3:134264200-134272800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr3:134264200-134272800	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr3:134264200-134272800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr3:134264200-134272800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr3:134264400-134272800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr3:134264400-134272800	Strong transcription	HUES64 Cell Line	embryonic stem cell
18	chr3:134264400-134272800	Strong transcription	Primary B cells from peripheral blood	blood
19	chr3:134264400-134272800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr3:134264400-134272800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr3:134264400-134272800	Strong transcription	Liver	Liver
22	chr3:134264400-134272800	Strong transcription	Fetal Thymus	thymus
23	chr3:134264400-134272800	Strong transcription	Rectal Mucosa Donor 29	rectum
24	chr3:134264400-134272800	Strong transcription	Stomach Smooth Muscle	stomach
25	chr3:134264600-134273000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr3:134265000-134272800	Strong transcription	Adipose Nuclei	Adipose
27	chr3:134265200-134272800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr3:134265200-134272800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr3:134265200-134272800	Strong transcription	Skeletal Muscle Female	skeletal muscle
30	chr3:134265200-134273000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr3:134265400-134272800	Strong transcription	HUES6 Cell Line	embryonic stem cell
32	chr3:134265400-134272800	Strong transcription	Duodenum Mucosa	Duodenum
33	chr3:134265400-134272800	Strong transcription	Duodenum Smooth Muscle	Duodenum
34	chr3:134265600-134272800	Strong transcription	Primary monocytes fromperipheralblood	blood
35	chr3:134265600-134272800	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr3:134265800-134272800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr3:134266000-134272800	Strong transcription	Primary neutrophils fromperipheralblood	blood
38	chr3:134267000-134275600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr3:134267200-134272800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr3:134267800-134281200	Weak transcription	A549	lung
41	chr3:134268200-134272800	Strong transcription	Brain Inferior Temporal Lobe	brain
42	chr3:134268400-134272800	Strong transcription	Placenta	Placenta
43	chr3:134269200-134272800	Strong transcription	HUVEC	blood vessel
44	chr3:134269600-134272800	Strong transcription	HMEC	breast
45	chr3:134269800-134273400	Weak transcription	Hela-S3	cervix
46	chr3:134269800-134278000	Weak transcription	Fetal Stomach	stomach
47	chr3:134269800-134278400	Weak transcription	Fetal Intestine Small	intestine
48	chr3:134269800-134278600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr3:134269800-134278600	Weak transcription	Esophagus	oesophagus
50	chr3:134269800-134279400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links