Variant report

Variant	rs6799110
Chromosome Location	chr3:134206749-134206750
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:134201396-134207240	IMR90	lung:	n/a	n/a
2	MEF2C	chr3:134206261-134206782	GM12878	blood:	n/a	chr3:134206467-134206475 chr3:134206489-134206504 chr3:134206489-134206504
3	POLR2A	chr3:134206220-134206906	Hela-S3	cervix:	n/a	n/a
4	BCLAF1	chr3:134206216-134206793	GM12878	blood:	n/a	n/a
5	POLR2A	chr3:134203367-134206821	GM12878	blood:	n/a	n/a
6	POLR2A	chr3:134203252-134206990	GM12891	blood:	n/a	n/a
7	CHD1	chr3:134203084-134207232	IMR90	lung:	n/a	chr3:134206506-134206516
8	MEF2A	chr3:134206199-134206757	GM12878	blood:	n/a	chr3:134206467-134206475 chr3:134206251-134206266 chr3:134206489-134206504
9	POLR2A	chr3:134203309-134207157	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr3:134074631..134077411-chr3:134204905..134207486,2	MCF-7	breast:
2	chr3:134081380..134086335-chr3:134201546..134208103,7	MCF-7	breast:
3	chr3:134089711..134094738-chr3:134202793..134208651,12	MCF-7	breast:
4	chr3:134091805..134100491-chr3:134198620..134206897,15	MCF-7	breast:

Variant related genes	Relation type
ANAPC13	TF binding region
ENSG00000214289	Chromatin interaction
ENSG00000114019	Chromatin interaction

Extended variants
information (count: 167 )
Associated
traits (count: 24 )

rSNPs within LD-proxies of this variant (count:160)

rs_ID	r²[population]
rs10804632	0.89[ASN][1000 genomes]
rs10935113	0.89[EUR][1000 genomes]
rs10935120	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1138273	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11706117	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11708531	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11919350	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11919458	0.80[ASN][1000 genomes]
rs11927068	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11928499	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12490835	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12492930	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12637751	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13059720	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13065405	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13065773	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13081177	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13081688	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13087875	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13089966	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13096604	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13316205	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1357762	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1498718	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1534026	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1534027	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1534028	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17694011	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1814336	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1814337	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1863911	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1863912	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1863913	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1874883	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1880376	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1880377	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2177601	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2177602	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2241556	0.92[EUR][1000 genomes]
rs2370578	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2370641	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2370642	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2373865	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28409322	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28702610	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2887797	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34029813	0.86[EUR][1000 genomes]
rs35718987	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35933983	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36006513	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3846055	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3846056	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3856729	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3932818	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4309773	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4367113	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4417907	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4498009	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4539979	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4572812	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4955485	0.86[ASN][1000 genomes]
rs4955555	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4974478	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4974480	0.90[EUR][1000 genomes]
rs4974481	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4974483	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4974484	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4974493	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55913793	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56899746	0.80[ASN][1000 genomes]
rs62269547	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6439484	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6439487	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6439492	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6763088	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6763093	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6765505	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6766818	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6766897	0.94[EUR][1000 genomes]
rs6768323	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6769885	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6772406	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6772896	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6776203	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6782128	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6782563	0.86[ASN][1000 genomes]
rs6785027	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6787371	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6790338	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6790466	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6793487	0.86[ASN][1000 genomes]
rs6799543	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6800862	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6801596	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6802654	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6804770	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6805388	0.90[EUR][1000 genomes]
rs6806417	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7356093	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7371896	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7372770	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7373874	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7374158	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7374325	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7427492	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7428326	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7429866	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7432268	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7433663	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7611828	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7619451	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7627654	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7627726	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7630874	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7637227	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7648990	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7649910	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9289471	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9289475	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9289476	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9289478	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs934093	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9756173	0.80[ASN][1000 genomes]
rs9809619	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9813774	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9814567	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9815297	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9815894	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9815983	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9819532	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9820150	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9820425	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9826496	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9827672	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9827987	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9828815	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9829092	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9832785	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9833753	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9834755	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9835204	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9838834	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9841180	0.93[EUR][1000 genomes]
rs9841212	0.94[EUR][1000 genomes]
rs9844537	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9850015	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9854299	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9855013	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9863786	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9869981	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9870262	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9871305	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9876658	0.90[EUR][1000 genomes]
rs9883753	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9884031	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9968172	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9985341	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9985356	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9989967	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9990351	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877510	chr3:134126150-134400448	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv877511	chr3:134174071-134358947	Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv877512	chr3:134174071-134372486	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv877513	chr3:134174071-134379752	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv877514	chr3:134191938-134372486	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv829730	chr3:134199097-134359544	Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
7	esv33705	chr3:134201034-134210747	Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

mRNA abundance (count:24)

SNP	Gene	Cis/trans	Tissue	Source
rs6799110	ANAPC13	cis	Esophagus Mucosa	GTEx
rs6799110	CEP63	cis	Nerve Tibial	GTEx
rs6799110	CEP63	cis	Artery Tibial	GTEx
rs6799110	ANAPC13	cis	multi-tissue	Pritchard
rs6799110	CEP63	Cis_1M	lymphoblastoid	RTeQTL
rs6799110	ANAPC13	cis	Adipose Subcutaneous	GTEx
rs6799110	CEP63	cis	lung	GTEx
rs6799110	ANAPC13	cis	Stomach	GTEx
rs6799110	ANAPC13	cis	Whole Blood	GTEx
rs6799110	ANAPC13	cis	lung	GTEx
rs6799110	CEP63	cis	Esophagus Mucosa	GTEx
rs6799110	ANAPC13	cis	Muscle Skeletal	GTEx
rs6799110	ANAPC13	cis	Esophagus Muscularis	GTEx
rs6799110	CEP63	cis	Esophagus Muscularis	GTEx
rs6799110	CEP63	cis	Skin Sun Exposed Lower leg	GTEx
rs6799110	ANAPC13	cis	Artery Aorta	GTEx
rs6799110	ANAPC13	cis	Heart Left Ventricle	GTEx
rs6799110	ANAPC13	Cis_1M	lymphoblastoid	RTeQTL
rs6799110	ANAPC13	cis	Artery Tibial	GTEx
rs6799110	CEP63	cis	Muscle Skeletal	GTEx
rs6799110	ANAPC13	cis	Skin Sun Exposed Lower leg	GTEx
rs6799110	ANAPC13	cis	Thyroid	GTEx
rs6799110	ANAPC13	cis	Nerve Tibial	GTEx
rs6799110	CEP63	cis	Whole Blood	GTEx

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134203800-134206800	Active TSS	K562	blood
2	chr3:134203800-134207000	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr3:134205200-134206800	Flanking Active TSS	Primary B cells from cord blood	blood
4	chr3:134205200-134206800	Flanking Active TSS	Primary hematopoietic stem cells	blood
5	chr3:134205400-134207000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr3:134205400-134207600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
7	chr3:134205600-134206800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:134205600-134206800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:134205600-134206800	Flanking Active TSS	Brain Hippocampus Middle	brain
10	chr3:134205600-134206800	Flanking Active TSS	Osteobl	bone
11	chr3:134205600-134207000	Flanking Active TSS	Primary T cells from cord blood	blood
12	chr3:134205600-134224200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr3:134205800-134207000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
14	chr3:134205800-134207000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
15	chr3:134205800-134224200	Weak transcription	Esophagus	oesophagus
16	chr3:134205800-134224200	Weak transcription	Left Ventricle	heart
17	chr3:134205800-134224200	Weak transcription	Lung	lung
18	chr3:134205800-134224400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr3:134206000-134206800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr3:134206000-134206800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr3:134206000-134206800	Weak transcription	Fetal Muscle Trunk	muscle
22	chr3:134206000-134206800	Weak transcription	Pancreas	Pancrea
23	chr3:134206000-134206800	Flanking Active TSS	Dnd41	blood
24	chr3:134206000-134207000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
25	chr3:134206000-134207000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr3:134206000-134207000	Enhancers	Fetal Intestine Small	intestine
27	chr3:134206000-134207000	Enhancers	Stomach Mucosa	stomach
28	chr3:134206000-134214800	Weak transcription	HSMM	muscle
29	chr3:134206000-134215000	Weak transcription	Placenta	Placenta
30	chr3:134206000-134224200	Weak transcription	Ovary	ovary
31	chr3:134206200-134206800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr3:134206200-134206800	Enhancers	Brain Anterior Caudate	brain
33	chr3:134206200-134206800	Enhancers	Colon Smooth Muscle	Colon
34	chr3:134206200-134206800	Enhancers	Fetal Lung	lung
35	chr3:134206200-134206800	Flanking Active TSS	A549	lung
36	chr3:134206200-134206800	Flanking Active TSS	NHEK	skin
37	chr3:134206200-134207000	Enhancers	Primary T helper naive cells from peripheral blood	blood
38	chr3:134206200-134207000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
39	chr3:134206200-134207000	Enhancers	Cortex derived primary cultured neurospheres	brain
40	chr3:134206200-134207000	Enhancers	Adipose Nuclei	Adipose
41	chr3:134206200-134207000	Enhancers	Fetal Heart	heart
42	chr3:134206200-134207200	Enhancers	Breast Myoepithelial Primary Cells	Breast
43	chr3:134206200-134207200	Enhancers	Small Intestine	intestine
44	chr3:134206200-134207200	Enhancers	Spleen	Spleen
45	chr3:134206200-134207600	Enhancers	Primary T cells fromperipheralblood	blood
46	chr3:134206400-134206800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
47	chr3:134206400-134206800	Enhancers	Brain Substantia Nigra	brain
48	chr3:134206400-134206800	Flanking Active TSS	Fetal Brain Male	brain
49	chr3:134206400-134206800	Enhancers	Fetal Intestine Large	intestine
50	chr3:134206400-134207000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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