Variant report

Variant	rs4955555
Chromosome Location	chr3:134286427-134286428
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 231 )
Associated
traits (count: 31 )

rSNPs within LD-proxies of this variant (count:224)

rs_ID	r²[population]
rs10804632	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10935113	0.82[EUR][1000 genomes]
rs10935120	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1138273	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[YRI][hapmap];0.92[AFR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11706117	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11708531	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11915964	0.91[CEU][hapmap];0.85[TSI][hapmap]
rs11919350	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11919458	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11927068	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11928499	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12490835	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12492930	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12637301	0.87[CEU][hapmap];0.93[JPT][hapmap]
rs12637751	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.93[MEX][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13059720	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13064209	0.84[CEU][hapmap]
rs13065405	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13065773	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13071551	0.82[ASN][1000 genomes]
rs13075117	0.83[CEU][hapmap]
rs13075253	0.84[CEU][hapmap]
rs13076825	0.83[CEU][hapmap]
rs13081177	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13081688	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13084192	0.84[CEU][hapmap]
rs13087875	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13088413	0.83[ASN][1000 genomes]
rs13089566	0.91[CEU][hapmap]
rs13089966	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13096604	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13098546	0.84[CEU][hapmap]
rs13316205	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13322305	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1357762	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1357764	0.91[CEU][hapmap]
rs1498718	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1534025	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs1534026	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1534027	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1534028	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1534030	0.83[CEU][hapmap];0.93[JPT][hapmap];0.86[MEX][hapmap]
rs17694011	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1814336	1.00[CEU][hapmap];0.93[CHB][hapmap];0.96[YRI][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1814337	0.95[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1863912	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1863913	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1874883	0.94[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.84[CHD][hapmap];0.91[LWK][hapmap];0.86[MKK][hapmap];0.97[TSI][hapmap];0.85[YRI][hapmap];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1880375	0.87[CEU][hapmap];0.93[JPT][hapmap]
rs1880376	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1880377	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1917130	0.95[CEU][hapmap];1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs2056603	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2056604	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2177601	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2177602	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2241556	0.88[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];0.86[MKK][hapmap];0.97[TSI][hapmap];0.85[EUR][1000 genomes]
rs2293293	0.88[CEU][hapmap];0.93[JPT][hapmap];0.93[MEX][hapmap];0.84[TSI][hapmap]
rs2293294	0.87[CEU][hapmap]
rs2370578	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2370641	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2370642	0.86[AFR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2373865	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28409322	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28702610	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2887797	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2888670	0.87[CEU][hapmap];0.93[JPT][hapmap]
rs34029813	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35718987	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35933983	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs36006513	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3846055	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3846056	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3856729	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3932818	0.96[CEU][hapmap];0.86[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4074521	0.88[CEU][hapmap];0.85[MEX][hapmap];0.81[TSI][hapmap]
rs4074522	0.88[CEU][hapmap];0.81[TSI][hapmap]
rs4245903	0.88[CEU][hapmap];0.93[JPT][hapmap];0.93[MEX][hapmap];0.83[TSI][hapmap]
rs4245905	0.83[CEU][hapmap];0.93[JPT][hapmap]
rs4245907	0.91[CEU][hapmap]
rs4306899	0.82[CEU][hapmap]
rs4309773	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4367113	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4417907	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4435682	0.91[CEU][hapmap]
rs4437193	0.80[CEU][hapmap]
rs4456908	0.93[JPT][hapmap]
rs4498009	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4539979	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4543053	0.80[CEU][hapmap];0.81[MEX][hapmap]
rs4572812	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4634170	0.84[CEU][hapmap]
rs4955485	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4955525	0.88[CEU][hapmap];0.93[JPT][hapmap];0.93[MEX][hapmap];0.84[TSI][hapmap]
rs4955526	0.88[CEU][hapmap];0.93[JPT][hapmap];0.93[MEX][hapmap];0.84[TSI][hapmap]
rs4955534	0.87[CEU][hapmap];0.93[JPT][hapmap]
rs4955542	0.87[CEU][hapmap];0.91[JPT][hapmap]
rs4955546	0.82[CEU][hapmap];0.93[JPT][hapmap]
rs4955547	0.84[CEU][hapmap]
rs4974478	0.87[AFR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4974480	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs4974481	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4974483	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4974484	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4974493	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55913793	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56899746	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62269547	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62269560	0.83[ASN][1000 genomes]
rs6439484	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6439487	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6439492	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6763088	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6763093	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6763188	0.91[CEU][hapmap]
rs6764764	0.84[CEU][hapmap]
rs6765505	0.81[AFR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6766818	0.86[AFR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6766897	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs6768323	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6769885	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6772406	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6772896	0.82[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6775611	0.91[CEU][hapmap];0.85[TSI][hapmap]
rs6776203	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6779326	0.84[CEU][hapmap];0.93[JPT][hapmap]
rs6782128	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6782563	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6785027	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6787371	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6790338	0.91[CHB][hapmap];0.83[AFR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6790466	0.92[CHB][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6793487	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6799110	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6799543	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6800862	0.96[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.95[TSI][hapmap];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6801596	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6802654	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6804770	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6805388	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs6806417	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6806810	0.88[CEU][hapmap];0.93[JPT][hapmap]
rs7356093	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7371896	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7372770	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7373874	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7374158	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7374325	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7427492	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7428326	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7429866	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7430034	0.83[CEU][hapmap];0.93[JPT][hapmap]
rs7432268	0.93[CHB][hapmap];0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7433663	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7433991	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7611611	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7611828	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7619451	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.93[MEX][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7623567	0.91[CEU][hapmap];0.91[JPT][hapmap]
rs7626557	0.91[CEU][hapmap];0.93[JPT][hapmap]
rs7627654	0.80[EUR][1000 genomes]
rs7627726	0.82[AFR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7630874	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.93[MEX][hapmap];0.97[TSI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7637227	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7648616	0.92[JPT][hapmap]
rs7648990	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7649910	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7653807	0.91[CEU][hapmap];0.85[TSI][hapmap]
rs9289471	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9289475	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9289476	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9289478	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs934093	0.87[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.85[LWK][hapmap];0.85[MEX][hapmap];0.86[MKK][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9756173	0.86[ASN][1000 genomes]
rs9809344	0.80[CEU][hapmap];0.93[JPT][hapmap];0.81[MEX][hapmap]
rs9809619	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9813774	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9814567	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.85[MEX][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9815297	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9815894	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9815983	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9819532	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9820150	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9820425	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9824185	0.88[CEU][hapmap];0.93[JPT][hapmap]
rs9826496	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9827672	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9827987	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9828815	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9829092	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9832785	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9833753	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9834755	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9835204	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9836401	0.84[CEU][hapmap];0.93[JPT][hapmap]
rs9838119	0.84[CEU][hapmap];0.93[JPT][hapmap]
rs9838467	0.84[CEU][hapmap];0.93[JPT][hapmap]
rs9838834	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9841180	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs9841212	1.00[CEU][hapmap];0.98[GIH][hapmap];0.97[TSI][hapmap];0.87[EUR][1000 genomes]
rs9841371	0.91[CEU][hapmap];0.93[JPT][hapmap]
rs9844537	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9847788	1.00[CEU][hapmap]
rs9848254	0.84[CEU][hapmap];0.93[JPT][hapmap]
rs9850015	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9851441	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9854299	1.00[CEU][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9855013	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9857242	0.88[CEU][hapmap];0.86[JPT][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap]
rs9857995	0.88[CEU][hapmap];0.93[JPT][hapmap];0.83[TSI][hapmap]
rs9863786	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9864346	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9869981	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9870262	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9871226	0.83[CEU][hapmap];0.93[JPT][hapmap]
rs9871305	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9876658	1.00[CEU][hapmap];0.82[GIH][hapmap];0.81[JPT][hapmap];0.97[TSI][hapmap];0.83[EUR][1000 genomes]
rs9883753	1.00[CEU][hapmap];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9884031	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9968172	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.93[MEX][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9985341	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9985356	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9989967	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9990351	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877510	chr3:134126150-134400448	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv877511	chr3:134174071-134358947	Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv877512	chr3:134174071-134372486	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv877513	chr3:134174071-134379752	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv877514	chr3:134191938-134372486	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv829730	chr3:134199097-134359544	Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
7	nsv1002382	chr3:134239191-134358001	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:31)

SNP	Gene	Cis/trans	Tissue	Source
rs4955555	CEP63	cis	Esophagus Mucosa	GTEx
rs4955555	ANAPC13	cis	Esophagus Mucosa	GTEx
rs4955555	ANAPC13	cis	Skin Sun Exposed Lower leg	GTEx
rs4955555	ANAPC13	cis	Adipose Subcutaneous	GTEx
rs4955555	EPHB1	cis	cerebellum	SCAN
rs4955555	CEP63	cis	Esophagus Muscularis	GTEx
rs4955555	ANAPC13	cis	lymphoblastoid	seeQTL
rs4955555	CEP63	Cis_1M	lymphoblastoid	RTeQTL
rs4955555	CEP63	cis	lung	GTEx
rs4955555	ANAPC13	cis	Heart Left Ventricle	GTEx
rs4955555	ANAPC13	cis	cerebellum	SCAN
rs4955555	KY	cis	cerebellum	SCAN
rs4955555	ANAPC13	Cis_1M	lymphoblastoid	RTeQTL
rs4955555	ANAPC13	cis	Thyroid	GTEx
rs4955555	ANAPC13	cis	Whole Blood	GTEx
rs4955555	CEP63	cis	Whole Blood	GTEx
rs4955555	ANAPC13	cis	multi-tissue	Pritchard
rs4955555	ANAPC13	cis	Esophagus Muscularis	GTEx
rs4955555	ANAPC13	cis	lung	GTEx
rs4955555	ANAPC13	cis	Nerve Tibial	GTEx
rs4955555	ANAPC13	cis	Artery Tibial	GTEx
rs4955555	CEP63	cis	Muscle Skeletal	GTEx
rs4955555	CEP63	cis	Artery Tibial	GTEx
rs4955555	ANAPC13	cis	parietal	SCAN
rs4955555	ANAPC13	cis	Artery Aorta	GTEx
rs4955555	CEP63	cis	Skin Sun Exposed Lower leg	GTEx
rs4955555	CEP63	cis	parietal	SCAN
rs4955555	CEP63	cis	Nerve Tibial	GTEx
rs4955555	TXNDC6	cis	cerebellum	SCAN
rs4955555	ANAPC13	cis	Stomach	GTEx
rs4955555	ANAPC13	cis	Muscle Skeletal	GTEx

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134256600-134287200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:134269800-134296600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr3:134271400-134287800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr3:134272000-134289800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:134272200-134287200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr3:134279400-134287200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr3:134279400-134288600	Weak transcription	HSMMtube	muscle
8	chr3:134280800-134286800	Weak transcription	Brain Anterior Caudate	brain
9	chr3:134281200-134288400	Weak transcription	Duodenum Mucosa	Duodenum
10	chr3:134281600-134287600	Weak transcription	Brain Cingulate Gyrus	brain
11	chr3:134281600-134297600	Weak transcription	Gastric	stomach
12	chr3:134281800-134287800	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr3:134282000-134286600	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr3:134282200-134287800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr3:134283200-134287000	Weak transcription	Primary B cells from cord blood	blood
16	chr3:134283400-134286600	Weak transcription	Aorta	Aorta
17	chr3:134283400-134287000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr3:134283400-134288000	Weak transcription	Brain Hippocampus Middle	brain
19	chr3:134283400-134297200	Weak transcription	Brain Angular Gyrus	brain
20	chr3:134283600-134286800	Weak transcription	Fetal Brain Female	brain
21	chr3:134284000-134287400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr3:134284400-134286600	Weak transcription	Primary hematopoietic stem cells	blood
23	chr3:134284400-134292200	Weak transcription	Primary T cells from cord blood	blood
24	chr3:134286400-134286600	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr3:134286400-134286600	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr3:134286400-134286600	Enhancers	Fetal Kidney	kidney
27	chr3:134286400-134286600	Enhancers	Fetal Muscle Leg	muscle
28	chr3:134286400-134286600	Enhancers	Spleen	Spleen
29	chr3:134286400-134286600	Enhancers	Monocytes-CD14+_RO01746	blood
30	chr3:134286400-134286800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr3:134286400-134286800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr3:134286400-134287000	Enhancers	Fetal Lung	lung
33	chr3:134286400-134287400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links