Variant report

Variant	rs2888670
Chromosome Location	chr3:134326684-134326685
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 172 )
Associated
traits (count: 19 )

rSNPs within LD-proxies of this variant (count:165)

rs_ID	r²[population]
rs10804632	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10935120	0.87[CEU][hapmap];0.93[JPT][hapmap];0.83[YRI][hapmap]
rs10935123	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1138273	0.84[CEU][hapmap]
rs11708531	0.87[CEU][hapmap];0.93[JPT][hapmap]
rs11915964	0.82[EUR][1000 genomes]
rs11919350	0.87[CEU][hapmap]
rs11919458	0.87[EUR][1000 genomes]
rs11927539	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11927540	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12490835	0.82[CEU][hapmap]
rs12492930	0.84[CEU][hapmap];0.93[JPT][hapmap]
rs12637301	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12637751	0.87[CEU][hapmap]
rs13064209	0.96[CEU][hapmap];0.83[CHB][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13071551	0.88[EUR][1000 genomes]
rs13075117	0.96[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13075253	0.96[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13076825	0.96[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13084192	0.96[CEU][hapmap];0.83[CHB][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13088413	0.88[EUR][1000 genomes]
rs13089566	0.82[EUR][1000 genomes]
rs13096604	0.84[CEU][hapmap]
rs13098546	0.96[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13322305	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1357762	0.83[CEU][hapmap];0.93[JPT][hapmap];0.81[YRI][hapmap]
rs1357764	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1404289	0.91[EUR][1000 genomes]
rs1498718	0.87[CEU][hapmap];0.86[JPT][hapmap];0.83[YRI][hapmap]
rs1534025	0.83[CEU][hapmap];0.88[EUR][1000 genomes]
rs1534029	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1534030	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17694011	0.93[JPT][hapmap]
rs1814336	0.86[CEU][hapmap]
rs1814337	0.93[JPT][hapmap]
rs1863913	0.87[CEU][hapmap];0.93[JPT][hapmap]
rs1874883	0.87[CEU][hapmap]
rs1880374	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1880375	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1880376	0.84[CEU][hapmap]
rs1880378	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1880379	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1917130	0.82[CEU][hapmap];0.88[EUR][1000 genomes]
rs2056603	0.84[CEU][hapmap];0.93[JPT][hapmap];0.82[YRI][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2056604	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2241556	0.87[CEU][hapmap]
rs2293293	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2293294	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[YRI][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2887797	0.84[CEU][hapmap]
rs3932818	0.82[CEU][hapmap]
rs4074521	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4074522	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4074523	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4245903	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4245904	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4245905	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4245907	0.80[YRI][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4245908	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4306899	0.95[CEU][hapmap];0.83[CHB][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4306900	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4318591	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4435681	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4435682	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4437193	0.92[CEU][hapmap];0.84[YRI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4456908	0.92[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4498009	0.84[CEU][hapmap]
rs4519744	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4535271	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4539979	0.83[CEU][hapmap];0.93[JPT][hapmap];0.82[YRI][hapmap]
rs4543053	0.91[CEU][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4605591	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4634170	0.95[CEU][hapmap];0.83[CHB][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4955468	0.92[CEU][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4955485	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4955525	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4955526	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4955534	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4955542	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4955544	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4955545	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4955546	0.95[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4955547	0.95[CEU][hapmap];0.83[CHB][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4955548	0.80[YRI][hapmap];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4955555	0.87[CEU][hapmap];0.93[JPT][hapmap]
rs4974480	0.87[CEU][hapmap]
rs55835132	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56899746	0.85[EUR][1000 genomes]
rs58491661	0.82[EUR][1000 genomes]
rs58808286	0.84[EUR][1000 genomes]
rs62269560	0.88[EUR][1000 genomes]
rs6439484	0.84[CEU][hapmap];0.93[JPT][hapmap]
rs6763088	0.84[CEU][hapmap]
rs6763188	0.82[EUR][1000 genomes]
rs6764764	0.95[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6766897	0.83[CEU][hapmap]
rs6768323	0.87[CEU][hapmap]
rs6769885	0.82[CEU][hapmap];0.93[JPT][hapmap]
rs6772896	0.87[CEU][hapmap]
rs6775611	0.82[EUR][1000 genomes]
rs6779294	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6779326	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6782563	0.87[EUR][1000 genomes]
rs6785027	0.87[CEU][hapmap];0.93[JPT][hapmap]
rs6793487	0.87[EUR][1000 genomes]
rs6794258	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6800862	0.82[CEU][hapmap]
rs6804770	0.84[CEU][hapmap];0.93[JPT][hapmap]
rs6805388	0.87[CEU][hapmap]
rs6806417	0.87[CEU][hapmap];0.93[JPT][hapmap]
rs6806810	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7356093	0.87[CEU][hapmap]
rs7371896	0.84[CEU][hapmap];0.93[JPT][hapmap]
rs7374325	0.84[CEU][hapmap]
rs7427492	0.87[CEU][hapmap]
rs7430034	0.95[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7433663	0.93[JPT][hapmap]
rs7433991	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7611611	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7619451	0.87[CEU][hapmap]
rs7623567	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7626557	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7630874	0.87[CEU][hapmap]
rs7633868	0.81[JPT][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7641798	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7642266	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7648616	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7653807	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7653880	0.82[EUR][1000 genomes]
rs9289471	0.87[CEU][hapmap];0.93[JPT][hapmap]
rs9289476	0.84[CEU][hapmap];0.93[JPT][hapmap];0.82[YRI][hapmap]
rs9289478	0.91[CEU][hapmap];0.93[JPT][hapmap]
rs9756173	0.83[EUR][1000 genomes]
rs9809344	0.91[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9809619	0.87[CEU][hapmap];0.93[JPT][hapmap]
rs9813774	0.84[CEU][hapmap];0.93[JPT][hapmap]
rs9814567	0.87[CEU][hapmap]
rs9824185	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9828815	0.87[CEU][hapmap];0.93[JPT][hapmap]
rs9835204	0.87[CEU][hapmap];0.93[JPT][hapmap]
rs9836401	0.96[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9838119	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9838467	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9838621	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9838889	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9839705	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9841180	0.83[CEU][hapmap];0.80[YRI][hapmap]
rs9841212	0.87[CEU][hapmap]
rs9841371	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9846111	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9847788	0.84[CEU][hapmap]
rs9848254	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9851441	0.84[CEU][hapmap];0.93[JPT][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9854299	0.84[CEU][hapmap]
rs9855013	0.83[CEU][hapmap];0.93[JPT][hapmap]
rs9857242	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9857995	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9864346	0.83[CEU][hapmap];0.93[JPT][hapmap];0.84[YRI][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9871226	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9876658	0.87[CEU][hapmap]
rs9883753	0.82[CEU][hapmap]
rs9968172	0.87[CEU][hapmap]
rs9985341	0.84[CEU][hapmap];0.93[JPT][hapmap]
rs9985356	0.87[CEU][hapmap];0.93[JPT][hapmap];0.83[YRI][hapmap]
rs9989967	0.87[CEU][hapmap];0.93[JPT][hapmap];0.83[YRI][hapmap]
rs9990351	0.87[CEU][hapmap];0.93[JPT][hapmap];0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877510	chr3:134126150-134400448	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv877511	chr3:134174071-134358947	Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv877512	chr3:134174071-134372486	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv877513	chr3:134174071-134379752	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv877514	chr3:134191938-134372486	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv829730	chr3:134199097-134359544	Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
7	nsv1002382	chr3:134239191-134358001	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:19)

SNP	Gene	Cis/trans	Tissue	Source
rs2888670	ANAPC13	cis	Adipose Subcutaneous	GTEx
rs2888670	ANAPC13	cis	Esophagus Muscularis	GTEx
rs2888670	ANAPC13	cis	Thyroid	GTEx
rs2888670	ANAPC13	cis	multi-tissue	Pritchard
rs2888670	CEP63	cis	Artery Tibial	GTEx
rs2888670	CEP63	cis	Esophagus Muscularis	GTEx
rs2888670	CEP63	Cis_1M	lymphoblastoid	RTeQTL
rs2888670	ANAPC13	cis	lung	GTEx
rs2888670	ANAPC13	Cis_1M	lymphoblastoid	RTeQTL
rs2888670	ANAPC13	cis	Artery Tibial	GTEx
rs2888670	ANAPC13	cis	Stomach	GTEx
rs2888670	ANAPC13	cis	Muscle Skeletal	GTEx
rs2888670	ANAPC13	cis	Nerve Tibial	GTEx
rs2888670	CEP63	cis	lung	GTEx
rs2888670	ANAPC13	cis	Esophagus Mucosa	GTEx
rs2888670	ANAPC13	cis	Artery Aorta	GTEx
rs2888670	CEP63	cis	Skin Sun Exposed Lower leg	GTEx
rs2888670	CEP63	cis	Esophagus Mucosa	GTEx
rs2888670	ANAPC13	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134319600-134334600	Weak transcription	Aorta	Aorta
2	chr3:134319800-134353800	Weak transcription	Left Ventricle	heart
3	chr3:134320400-134338000	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr3:134321200-134335200	Weak transcription	Ovary	ovary
5	chr3:134321400-134327800	Weak transcription	Brain Angular Gyrus	brain
6	chr3:134321600-134329200	Weak transcription	Fetal Lung	lung
7	chr3:134321600-134336800	Weak transcription	Brain Anterior Caudate	brain
8	chr3:134321600-134349200	Weak transcription	Brain Substantia Nigra	brain
9	chr3:134321800-134328400	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr3:134321800-134337400	Weak transcription	Brain Cingulate Gyrus	brain
11	chr3:134321800-134337800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr3:134322000-134328800	Weak transcription	Brain Hippocampus Middle	brain
13	chr3:134322200-134331200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr3:134322600-134331200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr3:134324000-134327400	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr3:134324400-134327000	Enhancers	Primary hematopoietic stem cells	blood
17	chr3:134324800-134329600	Weak transcription	Right Ventricle	heart
18	chr3:134324800-134333200	Genic enhancers	Skeletal Muscle Female	skeletal muscle
19	chr3:134325000-134327000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
20	chr3:134325200-134327000	Genic enhancers	Skeletal Muscle Male	skeletal muscle
21	chr3:134325200-134330400	Genic enhancers	Fetal Muscle Trunk	muscle
22	chr3:134325200-134331400	Genic enhancers	Fetal Muscle Leg	muscle
23	chr3:134325400-134326800	Enhancers	Psoas Muscle	Psoas
24	chr3:134325400-134327000	Enhancers	Lung	lung
25	chr3:134325600-134329600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr3:134325600-134332200	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr3:134326000-134326800	Enhancers	Stomach Smooth Muscle	stomach
28	chr3:134326000-134329000	Weak transcription	Fetal Heart	heart
29	chr3:134326000-134364800	Weak transcription	Osteobl	bone
30	chr3:134326200-134326800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr3:134326200-134327800	Enhancers	Monocytes-CD14+_RO01746	blood
32	chr3:134326200-134340200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr3:134326400-134326800	Strong transcription	Fetal Intestine Small	intestine
34	chr3:134326400-134327000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
35	chr3:134326600-134326800	Flanking Active TSS	Spleen	Spleen
36	chr3:134326600-134328400	Enhancers	Primary neutrophils fromperipheralblood	blood
37	chr3:134326600-134329400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links