Variant report

Variant	rs62269560
Chromosome Location	chr6:116827902-116827903
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 224 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:222)

rs_ID	r²[population]
rs10804632	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10935120	0.81[ASN][1000 genomes]
rs10935123	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1138273	0.85[ASN][1000 genomes]
rs11706117	0.85[ASN][1000 genomes]
rs11708531	0.81[ASN][1000 genomes]
rs11915964	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11919350	0.85[ASN][1000 genomes]
rs11919458	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11927068	0.85[ASN][1000 genomes]
rs11927539	0.88[EUR][1000 genomes]
rs11927540	0.87[EUR][1000 genomes]
rs11928499	0.85[ASN][1000 genomes]
rs12490835	0.85[ASN][1000 genomes]
rs12492930	0.81[ASN][1000 genomes]
rs12637301	0.88[EUR][1000 genomes]
rs12637751	0.85[ASN][1000 genomes]
rs13059720	0.85[ASN][1000 genomes]
rs13064209	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13065405	0.85[ASN][1000 genomes]
rs13065773	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs13071551	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13075117	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13075253	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13076825	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13081177	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs13081688	0.85[ASN][1000 genomes]
rs13084192	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13087875	0.85[ASN][1000 genomes]
rs13088413	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13089566	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13089966	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs13096604	0.85[ASN][1000 genomes]
rs13098546	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13316205	0.82[ASN][1000 genomes]
rs13322305	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1357762	0.81[ASN][1000 genomes]
rs1357764	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1404289	0.81[EUR][1000 genomes]
rs1534025	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1534026	0.83[ASN][1000 genomes]
rs1534027	0.83[ASN][1000 genomes]
rs1534028	0.82[ASN][1000 genomes]
rs1534029	0.83[EUR][1000 genomes]
rs1534030	0.83[EUR][1000 genomes]
rs17694011	0.81[ASN][1000 genomes]
rs1814336	0.82[ASN][1000 genomes]
rs1874883	0.80[ASN][1000 genomes]
rs1880374	0.88[EUR][1000 genomes]
rs1880375	0.88[EUR][1000 genomes]
rs1880376	0.85[ASN][1000 genomes]
rs1880377	0.85[ASN][1000 genomes]
rs1880378	0.83[EUR][1000 genomes]
rs1880379	0.83[EUR][1000 genomes]
rs1917130	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2056603	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2056604	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2177601	0.85[ASN][1000 genomes]
rs2177602	0.81[ASN][1000 genomes]
rs2293293	0.88[EUR][1000 genomes]
rs2293294	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2370578	0.82[ASN][1000 genomes]
rs2370641	0.81[ASN][1000 genomes]
rs2370642	0.85[ASN][1000 genomes]
rs2373865	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs28409322	0.85[ASN][1000 genomes]
rs2887797	0.80[ASN][1000 genomes]
rs2888670	0.88[EUR][1000 genomes]
rs35718987	0.88[ASN][1000 genomes]
rs35933983	0.88[ASN][1000 genomes]
rs36006513	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs3846055	0.80[ASN][1000 genomes]
rs3846056	0.81[ASN][1000 genomes]
rs3856729	0.82[ASN][1000 genomes]
rs4074521	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4074522	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4074523	0.88[EUR][1000 genomes]
rs4245903	0.88[EUR][1000 genomes]
rs4245904	0.88[EUR][1000 genomes]
rs4245905	0.83[EUR][1000 genomes]
rs4245907	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4245908	0.81[EUR][1000 genomes]
rs4306899	0.83[EUR][1000 genomes]
rs4306900	0.82[EUR][1000 genomes]
rs4309773	0.83[ASN][1000 genomes]
rs4318591	0.82[EUR][1000 genomes]
rs4367113	0.83[ASN][1000 genomes]
rs4417907	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4435681	0.81[EUR][1000 genomes]
rs4435682	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4437193	0.81[EUR][1000 genomes]
rs4456908	0.81[EUR][1000 genomes]
rs4498009	0.82[ASN][1000 genomes]
rs4519744	0.88[EUR][1000 genomes]
rs4535271	0.88[EUR][1000 genomes]
rs4539979	0.81[ASN][1000 genomes]
rs4543053	0.81[EUR][1000 genomes]
rs4572812	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4605591	0.83[EUR][1000 genomes]
rs4634170	0.83[EUR][1000 genomes]
rs4955468	0.81[EUR][1000 genomes]
rs4955485	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4955525	0.88[EUR][1000 genomes]
rs4955526	0.88[EUR][1000 genomes]
rs4955534	0.88[EUR][1000 genomes]
rs4955542	0.83[EUR][1000 genomes]
rs4955544	0.82[EUR][1000 genomes]
rs4955545	0.81[EUR][1000 genomes]
rs4955546	0.82[EUR][1000 genomes]
rs4955547	0.83[EUR][1000 genomes]
rs4955548	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4955555	0.83[ASN][1000 genomes]
rs4974483	0.81[ASN][1000 genomes]
rs4974484	0.85[ASN][1000 genomes]
rs4974493	0.85[ASN][1000 genomes]
rs55835132	0.88[EUR][1000 genomes]
rs55913793	0.83[ASN][1000 genomes]
rs56899746	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58491661	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58808286	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62269547	0.81[ASN][1000 genomes]
rs6439484	0.81[ASN][1000 genomes]
rs6763088	0.85[ASN][1000 genomes]
rs6763093	0.85[ASN][1000 genomes]
rs6763188	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6764764	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6766818	0.85[ASN][1000 genomes]
rs6768323	0.85[ASN][1000 genomes]
rs6769885	0.83[ASN][1000 genomes]
rs6772896	0.80[ASN][1000 genomes]
rs6775611	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6776203	0.81[ASN][1000 genomes]
rs6779294	0.83[EUR][1000 genomes]
rs6779326	0.83[EUR][1000 genomes]
rs6782128	0.83[ASN][1000 genomes]
rs6782563	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6785027	0.81[ASN][1000 genomes]
rs6787371	0.82[ASN][1000 genomes]
rs6790338	0.81[ASN][1000 genomes]
rs6790466	0.82[ASN][1000 genomes]
rs6793487	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6794258	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6799543	0.85[ASN][1000 genomes]
rs6800862	0.81[ASN][1000 genomes]
rs6801596	0.81[ASN][1000 genomes]
rs6802654	0.81[ASN][1000 genomes]
rs6804770	0.81[ASN][1000 genomes]
rs6806417	0.81[ASN][1000 genomes]
rs6806810	0.88[EUR][1000 genomes]
rs6808670	0.88[EUR][1000 genomes]
rs7356093	0.84[ASN][1000 genomes]
rs7371896	0.81[ASN][1000 genomes]
rs7374158	0.81[ASN][1000 genomes]
rs7374325	0.88[ASN][1000 genomes]
rs7427492	0.85[ASN][1000 genomes]
rs7428326	0.81[ASN][1000 genomes]
rs7429866	0.85[ASN][1000 genomes]
rs7430034	0.81[EUR][1000 genomes]
rs7432268	0.85[ASN][1000 genomes]
rs7433991	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7611611	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7619451	0.85[ASN][1000 genomes]
rs7623567	0.81[EUR][1000 genomes]
rs7626557	0.88[EUR][1000 genomes]
rs7630874	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7633868	0.83[EUR][1000 genomes]
rs7637227	0.81[ASN][1000 genomes]
rs7641798	0.81[EUR][1000 genomes]
rs7642266	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7648616	0.88[EUR][1000 genomes]
rs7648990	0.81[ASN][1000 genomes]
rs7653807	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7653880	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9289471	0.81[ASN][1000 genomes]
rs9289475	0.81[ASN][1000 genomes]
rs9289476	0.81[ASN][1000 genomes]
rs9289478	0.81[ASN][1000 genomes]
rs9756173	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9809344	0.81[EUR][1000 genomes]
rs9809619	0.83[ASN][1000 genomes]
rs9813774	0.81[ASN][1000 genomes]
rs9814567	0.84[ASN][1000 genomes]
rs9815297	0.81[ASN][1000 genomes]
rs9815894	0.83[ASN][1000 genomes]
rs9815983	0.81[ASN][1000 genomes]
rs9819532	0.83[ASN][1000 genomes]
rs9820150	0.85[ASN][1000 genomes]
rs9820425	0.85[ASN][1000 genomes]
rs9824185	0.88[EUR][1000 genomes]
rs9826496	0.81[ASN][1000 genomes]
rs9827987	0.88[ASN][1000 genomes]
rs9828815	0.81[ASN][1000 genomes]
rs9829092	0.85[ASN][1000 genomes]
rs9832785	0.85[ASN][1000 genomes]
rs9833753	0.81[ASN][1000 genomes]
rs9834755	0.81[ASN][1000 genomes]
rs9835204	0.81[ASN][1000 genomes]
rs9836401	0.82[EUR][1000 genomes]
rs9838119	0.83[EUR][1000 genomes]
rs9838467	0.83[EUR][1000 genomes]
rs9838621	0.83[EUR][1000 genomes]
rs9838889	0.83[EUR][1000 genomes]
rs9839705	0.88[EUR][1000 genomes]
rs9841371	0.88[EUR][1000 genomes]
rs9844537	0.81[ASN][1000 genomes]
rs9846111	0.82[EUR][1000 genomes]
rs9848254	0.83[EUR][1000 genomes]
rs9850015	0.85[ASN][1000 genomes]
rs9851441	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9855013	0.81[ASN][1000 genomes]
rs9857242	0.88[EUR][1000 genomes]
rs9857995	0.88[EUR][1000 genomes]
rs9864346	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9869981	0.81[ASN][1000 genomes]
rs9871226	0.83[EUR][1000 genomes]
rs9871305	0.85[ASN][1000 genomes]
rs9883753	0.81[ASN][1000 genomes]
rs9884031	0.81[ASN][1000 genomes]
rs9968172	0.85[ASN][1000 genomes]
rs9985341	0.81[ASN][1000 genomes]
rs9985356	0.81[ASN][1000 genomes]
rs9989967	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523972	chr6:116279187-117130704	ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv830783	chr6:116766869-116966232	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs62269560	ANAPC13	Cis_1M	lymphoblastoid	RTeQTL
rs62269560	CEP63	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:116816800-116829000	Weak transcription	Left Ventricle	heart
2	chr6:116822600-116832800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:116822800-116828200	Weak transcription	Osteobl	bone

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