Variant report

Variant	rs2786598
Chromosome Location	chr1:220722051-220722052
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10863557	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11118564	0.85[EUR][1000 genomes]
rs11118565	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11118566	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11118567	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11118570	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11118573	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11118576	0.80[EUR][1000 genomes]
rs11588721	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12047297	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12408540	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12737023	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1933001	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1933007	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2095669	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2244448	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2589577	0.83[AFR][1000 genomes]
rs2589581	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2589583	0.91[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs2589586	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2589589	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2786606	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2786610	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2786617	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35287074	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3753873	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3753874	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3767320	0.80[EUR][1000 genomes]
rs4846326	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4846650	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4846653	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4846655	0.80[EUR][1000 genomes]
rs6541154	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6675368	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7556280	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9430949	0.80[EUR][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220703400-220724400	Weak transcription	Aorta	Aorta
2	chr1:220706000-220723800	Weak transcription	Fetal Brain Male	brain
3	chr1:220716000-220722400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:220718000-220722200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr1:220718000-220722200	Weak transcription	Brain Angular Gyrus	brain
6	chr1:220718000-220738600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr1:220718200-220726200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr1:220718400-220726200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:220718600-220722200	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr1:220718600-220724200	Weak transcription	Fetal Heart	heart
11	chr1:220718600-220731200	Weak transcription	Esophagus	oesophagus
12	chr1:220718600-220738600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr1:220718600-220739000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr1:220718800-220723400	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr1:220719000-220725200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr1:220719400-220722200	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr1:220719400-220723800	Weak transcription	Left Ventricle	heart
18	chr1:220721600-220725200	Weak transcription	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links