Variant report

Variant	rs2786609
Chromosome Location	chr1:220715278-220715279
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:220454082..220455024-chr1:220714990..220715582,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1073460	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10779408	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10779409	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11118563	0.84[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs12048541	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12408540	0.81[AMR][1000 genomes]
rs12753927	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12758833	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17007855	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17007885	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1933002	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1933008	0.86[ASN][1000 genomes]
rs2253641	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2378401	0.82[ASN][1000 genomes]
rs2589578	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2589588	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2589589	0.82[AMR][1000 genomes]
rs2786601	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2786604	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2786607	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2786613	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2786619	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2889928	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2993209	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2994527	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35327085	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35553664	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4011894	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6677302	0.80[ASN][1000 genomes]
rs7532064	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9431262	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220703400-220724400	Weak transcription	Aorta	Aorta
2	chr1:220706000-220723800	Weak transcription	Fetal Brain Male	brain
3	chr1:220708800-220718000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:220710200-220717800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr1:220713200-220715800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr1:220714800-220716200	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr1:220715000-220716200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr1:220715200-220715400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
9	chr1:220715200-220715600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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