The 2.0 version of rSNPBase

Variant report

Variant rs4653543
Chromosome Location chr1:228439595-228439596
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:80 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:228430600-228447000 Weak transcription Stomach Smooth Muscle stomach
2 chr1:228430800-228440000 Strong transcription HUES48 Cell Line embryonic stem cell
3 chr1:228431200-228439800 Strong transcription Left Ventricle heart
4 chr1:228433200-228442400 Strong transcription HUES64 Cell Line embryonic stem cell
5 chr1:228433400-228449400 Weak transcription Brain Anterior Caudate brain
6 chr1:228434000-228439600 Weak transcription Duodenum Mucosa Duodenum
7 chr1:228434400-228440200 Strong transcription iPS-20b Cell Line embryonic stem cell
8 chr1:228434400-228440400 Strong transcription Fetal Muscle Trunk muscle
9 chr1:228434400-228441600 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
10 chr1:228434600-228439800 Strong transcription Primary T cells fromperipheralblood blood
11 chr1:228434600-228439800 Weak transcription Right Atrium heart
12 chr1:228434600-228440200 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
13 chr1:228434600-228440200 Strong transcription Fetal Thymus thymus
14 chr1:228434600-228440600 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
15 chr1:228434600-228444400 Weak transcription Sigmoid Colon Sigmoid Colon
16 chr1:228434600-228455400 Weak transcription Duodenum Smooth Muscle Duodenum
17 chr1:228434800-228440600 Strong transcription Fetal Stomach stomach
18 chr1:228434800-228444000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
19 chr1:228434800-228444000 Weak transcription Ovary ovary
20 chr1:228434800-228444600 Strong transcription Dnd41 blood
21 chr1:228434800-228445800 Weak transcription Pancreatic Islets Pancreatic Islet
22 chr1:228434800-228460000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
23 chr1:228434800-228462400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
24 chr1:228435000-228440400 Strong transcription Primary T helper naive cells fromperipheralblood blood
25 chr1:228435000-228441000 Strong transcription Fetal Muscle Leg muscle
26 chr1:228435000-228441200 Strong transcription Breast Myoepithelial Primary Cells Breast
27 chr1:228435000-228441200 Weak transcription Fetal Brain Male brain
28 chr1:228435000-228442400 Weak transcription Primary T killer naive cells fromperipheralblood blood
29 chr1:228435000-228442800 Weak transcription Aorta Aorta
30 chr1:228435000-228444000 Weak transcription Esophagus oesophagus
31 chr1:228435000-228446000 Weak transcription A549 lung
32 chr1:228435200-228440400 Strong transcription HUES6 Cell Line embryonic stem cell
33 chr1:228435200-228440400 Strong transcription Thymus Thymus
34 chr1:228435200-228443200 Weak transcription Fetal Kidney kidney
35 chr1:228435200-228449400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
36 chr1:228435200-228449600 Strong transcription Primary T cells from cord blood blood
37 chr1:228435200-228462800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
38 chr1:228435400-228441800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
39 chr1:228435600-228462600 Weak transcription Primary T helper naive cells from peripheral blood blood
40 chr1:228435800-228440000 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
41 chr1:228435800-228446400 Weak transcription Fetal Heart heart
42 chr1:228435800-228450200 Weak transcription iPS-18 Cell Line embryonic stem cell
43 chr1:228436000-228441200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
44 chr1:228436400-228439600 Strong transcription H1 Cell Line embryonic stem cell
45 chr1:228436600-228440200 Weak transcription Brain Inferior Temporal Lobe brain
46 chr1:228436600-228440600 Strong transcription Fetal Intestine Small intestine
47 chr1:228436800-228447000 Weak transcription Psoas Muscle Psoas
48 chr1:228437000-228440400 Genic enhancers Skeletal Muscle Male skeletal muscle
49 chr1:228437000-228443800 Weak transcription Primary T helper cells PMA-I stimulated --
50 chr1:228437000-228455600 Weak transcription Hela-S3 cervix

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Last update: Aug 31, 2015