Variant report

Variant	rs486576
Chromosome Location	chr11:104882988-104882989
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1503391	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1699089	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1699090	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17103597	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1792749	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs473549	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs476889	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs481736	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs483345	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs486537	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs486641	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs489715	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs490565	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs492366	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs492859	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs493426	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs496875	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs497638	1.00[EUR][1000 genomes]
rs498892	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs500577	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs501192	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs501394	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs501429	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs503153	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs504054	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs505901	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs507438	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs507509	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs516255	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs516286	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs517736	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs518878	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs518993	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs519047	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs524048	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs528076	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs531542	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs533050	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs534338	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs534811	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs536909	0.97[EUR][1000 genomes]
rs538984	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs539595	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs542571	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs542774	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs546210	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs546449	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs554344	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs557905	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs558315	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs560880	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs568910	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs572031	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs572687	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs572980	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs580253	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs67513506	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs692897	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs692914	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7114768	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs7928549	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046098	chr11:104207210-105003661	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv531430	chr11:104380924-105194452	Genic enhancers Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv898355	chr11:104730322-104897843	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv468862	chr11:104774014-105243371	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv556218	chr11:104774014-105243371	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	esv3385159	chr11:104786549-105051555	Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
7	nsv1041081	chr11:104797775-104912458	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
8	nsv1044970	chr11:104809246-105225032	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
9	nsv541160	chr11:104809246-105225032	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
10	nsv468863	chr11:104875261-104918517	Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
11	nsv556219	chr11:104875261-104918517	Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:104881800-104883000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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